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gtatctacctttctggtttttaacttggagttctcgaaatttcatctagtgtataagtgtaattttgattaaagagaggaaattgcagGTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTCTTGGAAGCTGCTAGTTTATCTGCATCCTTCCGTAGTGCTCCTCGTCCTG
species | Arabidopsis thaliana |
transcript | AT4G14210.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGCGCTTAAGACAAGAACAAGGAGGAGGAGTACTGCTGGTCCTTTGCAG GTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTCEST: gi|116473796|gb|EG516388.1|EG516388
genomic: AAGCGCTTAAGACAAGAACAAGGAGGAGGAGTACTGCTGGTCCTTTGCAGgtatctacct ... gaaattgcagGTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTC
EST: AAGCGCTTAAGACAAGAACAAGGAGGAGGAGTACTGCTGGTCCTTTGCAG GTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTCEST: gi|86060328|gb|DR356085.1|DR356085
genomic: AAGCGCTTAAGACAAGAACAAGGAGGAGGAGTACTGCTGGTCCTTTGCAGgtatctacct ... gaaattgcagGTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTC
EST: AAGCGCTTAAGACAAGAACAAGGAGGAGGAGTACTGCTGGTCCTTTGCAG GTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTCEST: gi|86060326|gb|DR356083.1|DR356083
genomic: AAGCGCTTAAGACAAGAACAAGGAGGAGGAGTACTGCTGGTCCTTTGCAGgtatctacct ... gaaattgcagGTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTC
EST: AAGCGCTTAAGACAAGAACAAGGAGGAGGAGTACTGCTGGTCCTTTGCAG GTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTC
genomic: AAGCGCTTAAGACAAGAACAAGGAGGAGGAGTACTGCTGGTCCTTTGCAGgtatctacct ... gaaattgcagGTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTC
tcgaaatttcatctagtgtataagtgtaattttgattaaagagaggaaattgcagGTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTCTTGGAAGCTGCTAGTTTATCTGCATCCTTCCGTAGTGCTCCTCGTCCTG
ttttgat putative branch site (score: 4)
tataagtgtaattttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctacctttctggtttttaacttggagttctcgaaatttcatctagtgtataagtgtaattttgattaaagagaggaaattgcagGTAGTTTGTGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTCTTGGAAGCTGCTAGTTTATCTGCATCCTTCCGTAGTGCTCCTCGTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC