1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaagattctttagtctttttgattcttctcttatatctctctgtgagtttgtttattgactgaatagataaatattgttttgatgaagATCTGGTCGCATTTATGCGATTGATACTAAGGAAAACCCGAGGGCTCCGTCTTTGTATAAGTATGTTGATCCTAAAGAGATTGCTGATAAGACTGGATTG
species | Arabidopsis thaliana |
transcript | AT4G14030.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATGGTGATGCTTCTGCTGATAGACGTTATCTCGTGTTACCGTCTCTTAT ATCTGGTCGCATTTATGCGATTGATACTAAGGAAAACCCGAGGGCTCCGTCEST: gi|125102381|gb|EL157159.1|EL157159
genomic: CATGGTGATGCTTCTGTTGATAGACGTTATCTCGTGTTACCGTCTCTTATgtaaagattc ... tttgatgaagATCTGGTCGCATTTATGCGATTGATACTAAGGAAAACCCGAGGGCTCCGTC
EST: ATAGACGTTATCTCGTGTTACCGTCTCTTAT ATCTGGTCGCATTTATGCGATTGATAACTAAGGAAAACCCGAGGGCTCCGTEST: gi|125195341|gb|EL210295.1|EL210295
genomic: ATAGACGTTATCTCGTGTTACCGTCTCTTATgtaaagattc ... tttgatgaagATCTGGTCGCATTTATGCGATTGATA-CTAAGGAAAACCCGAGGGCTCCGT
EST: CATGGTGATGCTTCTGTTGATAGACGTTATCTCGTGTTACCGTCTCTTAT ATCTGGTCGCATTTATGCGATTGATACTAAGGAAAACCCGAGGG
genomic: CATGGTGATGCTTCTGTTGATAGACGTTATCTCGTGTTACCGTCTCTTATgtaaagattc ... tttgatgaagATCTGGTCGCATTTATGCGATTGATACTAAGGAAAACCCGAGGG
tatctctctgtgagtttgtttattgactgaatagataaatattgttttgatgaagATCTGGTCGCATTTATGCGATTGATACTAAGGAAAACCCGAGGGCTCCGTCTTTGTATAAGTATGTTGATCCTAAAGAGATTGCTGATAAGACTGGATTG
ttgtttt CT-rich tract
aatagataaatattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagattctttagtctttttgattcttctcttatatctctctgtgagtttgtttattgactgaatagataaatattgttttgatgaagATCTGGTCGCATTTATGCGATTGATACTAAGGAAAACCCGAGGGCTCCGTCTTTGTATAAGTATGTTGATCCTAAAGAGATTGCTGATAAGACTGGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT