Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaagaactcttatggaacgctctctcttcatatttttcttttttctatttgtgtcacttttataatcatgaaaattctaaaaaatctatttttgttcccattggttttattatagTGGTGTTCGTAGATGAAGATGACATGGCAAAATATACAGCGAAGACGCTTAATGATCCCCGAACGTTGAATAAAACTGTGTATGTTAGACCTACCGACAA

Basic information

species Arabidopsis thaliana
transcript AT4G13660.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079375|gb|DR375132.1|DR375132
EST:     GTTCCCTCCGAAAAAGAAAGTTGATATTTATGGGGACGGAAATGTTAAAG                         TGGTGTTCGTAGATGAAGATGACATGGCAAAATATACAGCGAAGACGCTTA
genomic: GTTCCCTCCGAAAAACAAAGTTGATATTTATGGGGACGGAAATGTTAAAGgttagaagaa ... tttattatagTGGTGTTCGTAGATGAAGATGACATGGCAAAATATACAGCGAAGACGCTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataatcatgaaaattctaaaaaatctatttttgttcccattggttttattatagTGGTGTTCGTAGATGAAGATGACATGGCAAAATATACAGCGAAGACGCTTAATGATCCCCGAACGTTGAATAAAACTGTGTATGTTAGACCTACCGACAA
              ttctaaa  putative branch site (score: 2)
                                            ttttatt  putative PPT
       atgaaaattctaaaaa  TA-rich tract