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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagcttcttcttcttcttcttctttctctctcgtttgattttacttcaatggttttgtgtgttggattttatcagGTGAAAACTGGGATGACAATGACGGAGAAGATTCTAGCTAGAGCTTCGGAGAAGTCATTAGTGGTTCCTGGTGATAACATTTGGGTTAATGTTGATGTTC

Basic information

species Arabidopsis thaliana
transcript AT4G13430.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124917508|gb|EH991382.1|EH991382
EST:     AACTACAGGATCG                         GTGAAAACTGGGATGACAATGACGGAGAAGATTCTAGCTAGAGCTTCGGAG
genomic: AACTACAGGATCGgtataagctt ... attttatcagGTGAAAACTGGGATGACAATGACGGAGAAGATTCTAGCTAGAGCTTCGGAG
EST: gi|124995636|gb|EL067905.1|EL067905
EST:     TTATGGCTCCTCAAAAGGATCGGTCTCCTGGAACTACAGGATCG                         GTGAAAACTGGGATGACAATGACGGAGAAGATTCTAGCTAGAGCTTCGGAG
genomic: TTATGGCTCCTCAAAAGGATCGGTCTCCTGGAACTACAGGATCGgtataagctt ... attttatcagGTGAAAACTGGGATGACAATGACGGAGAAGATTCTAGCTAGAGCTTCGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctctctcgtttgattttacttcaatggttttgtgtgttggattttatcagGTGAAAACTGGGATGACAATGACGGAGAAGATTCTAGCTAGAGCTTCGGAGAAGTCATTAGTGGTTCCTGGTGATAACATTTGGGTTAATGTTGATGTTC
            gtttgat  putative branch site (score: 5)
                                              ttttatc  putative PPT
             tttgatttta  TA-rich tract