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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagaaaaaatacaattacctactatatttatactattttgtatgtgtgggtttgttagaagcttaatatgaaaaatgggatggttttggaacacagAAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAAGATACGAATGAATGGGAATCATGTGTTAAAAAATCTGGACGTGAGAAAGCCATCAATGATTGTT

Basic information

species Arabidopsis thaliana
transcript AT4G12890.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164074163|gb|ES046631.1|ES046631
EST:     GCAAACTAAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCG                         AAATTGCAGTACAAG
genomic: GCAAACTTAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGgtatagaaaa ... tggaacacagAAATTGCAGTACAAG
EST: gi|164108839|gb|ES029322.1|ES029322
EST:     CTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCG                         AAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAGGATACGAATGAGTGG
genomic: CTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGgtatagaaaa ... tggaacacagAAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAAGATACGAATGAATGG
EST: gi|86079855|gb|DR375612.1|DR375612
EST:     GCAAACTTAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCG                         AAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAGGATACGAATGAGTGG
genomic: GCAAACTTAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGgtatagaaaa ... tggaacacagAAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAAGATACGAATGAATGG
EST: gi|164014697|gb|ES176219.1|ES176219
EST:     AACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCG                         AAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAGGATACGAATGAGTGG
genomic: AACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGgtatagaaaa ... tggaacacagAAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAAGATACGAATGAATGG
EST: gi|163986202|gb|EL991987.1|EL991987
EST:     GCAAACTAAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCG                         AAATTGCAGTACAAGTTCATACG
genomic: GCAAACTTAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGgtatagaaaa ... tggaacacagAAATTGCAGTACAAGTTCATACG
EST: gi|164012102|gb|ES075461.1|ES075461
EST:     GCAAACTAAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCG                         AAATTGCAGTACAAGTTCA
genomic: GCAAACTTAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGgtatagaaaa ... tggaacacagAAATTGCAGTACAAGTTCA
EST: gi|164035774|gb|ES096601.1|ES096601
EST:     GCAAACTAAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCG                         AAATTGCAGTACAAGTTCATACGCTGCGTTGAAAA
genomic: GCAAACTTAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGgtatagaaaa ... tggaacacagAAATTGCAGTACAAGTTCATACGCTGCGTTGAAAA
EST: gi|164167490|gb|ES012994.1|ES012994
EST:     GAAGCTTGCGGTATAAGAACTTTGCCCGATCCG                         AAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAGGATACGAATG
genomic: GAAGCTTGCGGTATAAGAACTTTGCCCGATCCGgtatagaaaa ... tggaacacagAAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAAGATACGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgtgggtttgttagaagcttaatatgaaaaatgggatggttttggaacacagAAATTGCAGTACAAGTTCATACGCTGCGTTGAAAAAGATACGAATGAATGGGAATCATGTGTTAAAAAATCTGGACGTGAGAAAGCCATCAATGATTGTT
                   gcttaat  putative branch site (score: 4)
                     ttaatatgaaaaat  TA-rich tract