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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatgggattatctacttctgttctgctttaagtcatttacaggtgatttgactccttctataactctgttgtgtgtcagGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGCAGGGAATCTTTGCGAGTGCCTCCTGGCCAACCAGAGAACTTGAGAAAGACCT

Basic information

species Arabidopsis thaliana
transcript AT4G12780.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125222650|gb|EL236735.1|EL236735
EST:     CGACAGAGAACCAACCCTCTG                         GATCCTTTCCTAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGCAG
genomic: CGACAGAGAACCAACCCTCTGgtgagatggg ... tgtgtgtcagGATCCTTTCC-AGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttaagtcatttacaggtgatttgactccttctataactctgttgtgtgtcagGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGCAGGGAATCTTTGCGAGTGCCTCCTGGCCAACCAGAGAACTTGAGAAAGACCT
                                 ctataac  putative branch site (score: 3)
 ctctgtt  CT-rich tract
 ttctataa  TA-rich tract