1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtatgctaataccccttgttttgtctaaactctaaacctgatacaaaaactaaccggtttcgaataattttggcttagGGTGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGGACGTATCTCTAACTTTGCCGAGGCTATGAACAATATTCCTCCTCCTTTCGGAAACTTCA
species | Arabidopsis thaliana |
transcript | AT4G11290.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGCGCTGATATCATCACACTTGCTACTAGAGACTCTATTGTTGSTATT GGTGGACCGACATGGAACGTTCCAACGGGGCGSAGAGACGGACGTATCTCTEST: gi|124704829|gb|EH796231.1|EH796231
genomic: CTTGCGCTGATATCATCACACTTGCTACTAGAGACTCTATTGTTGCTATTgtgagtatgc ... tttggcttagGGTGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGGACGTATCTCT
EST: GCGCTGATATCATCACACTTGCTACTAGAGACTCTATTGTTGCTATT GGTGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGGACGTATCTEST: gi|86045038|gb|DR340793.1|DR340793
genomic: GCGCTGATATCATCACACTTGCTACTAGAGACTCTATTGTTGCTATTgtgagtatgc ... tttggcttagGGTGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGGACGTATCT
EST: CTTGCGCTGATATCATCACACTTGCTACTAGAGACTCTATTGTTGCTATT GCTTAGGGTGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGGACGTEST: gi|86045043|gb|DR340798.1|DR340798
genomic: CTTGCGCTGATATCATCACACTTGCTACTAGAGACTCTATTGTTGCTATTgtgagtatgc ... tttggcttagG----G--TGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGGACGT
EST: CTTGCGCTGATATCATCACACTTGCTACTAGAGACTCTATTGTTGCTATT GGTGGACCGACATGGAACGTTCCAACGGEST: gi|86045040|gb|DR340795.1|DR340795
genomic: CTTGCGCTGATATCATCACACTTGCTACTAGAGACTCTATTGTTGCTATTgtgagtatgc ... tttggcttagGGTGGACCGACATGGAACGTTCCAACGG
EST: CTTGCGCTGATATCATCACACTTGCTACTAGAGACTCTATTGTTGCTATT GGTGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGGGACGTATCTC
genomic: CTTGCGCTGATATCATCACACTTGCTACTAGAGACTCTATTGTTGCTATTgtgagtatgc ... tttggcttagGGTGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGG-ACGTATCTC
tctaaactctaaacctgatacaaaaactaaccggtttcgaataattttggcttagGGTGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGGACGTATCTCTAACTTTGCCGAGGCTATGAACAATATTCCTCCTCCTTTCGGAAACTTCA
aactaac putative branch site (score: 1)
tttcgaataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatgctaataccccttgttttgtctaaactctaaacctgatacaaaaactaaccggtttcgaataattttggcttagGGTGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGGACGTATCTCTAACTTTGCCGAGGCTATGAACAATATTCCTCCTCCTTTCGGAAACTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC