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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaataataacactctaatcactaatcactttctttattaattagactaactatatacataatttcaatttggttatggtaattattttgtaactcatgtgaagGTAGGAGATGGTAAGTCGGACCATTATTGTTGGCAAAGGCCAGAGGAAATGACTACTGATCGTAGGGCTTACAAAATTGACCGGAACAATCCCGGTTCGG

Basic information

species Arabidopsis thaliana
transcript AT4G11050.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11050.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA05G36930.1 (Glycine max), 3'ss of exon 2
------------------gtaacaataataacactc----taatcactaatcac-----tttctttattaattagact--aactatatacataatttcaatttggttatggtaattattttg-taactcatgtgaagGTAGGAGATGGTAAGTCGGACCATTATTGTTGGCAAAGGCCAGAGGAAATGACTACTGATCGTAGGGCTTACAAAATTGACCGGAACAATCCCGGTTCGG
                   ||| | |||      ||    | ||   | || |      |||  ||  || ||  | |   |   || |  || |   |||||  ||||| |  |  | | | |   | |     |||| ||||| || ||  | |||||||| |||||||||||||||||||| ||||| || || |||   || ||||| || || |  | ||||||||| ||||
gtacctttttttgttattttaatagtaaatttgttcggggttattttttattataaatgttttgttcgtagttgaatttagatgttacatgtagtagtaatttatttatgttggtgttgtgggtttttgacaattagGTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATGACAACCGACCGTCATGCCTACAAGATCGATCCAAGCAATCCCGGGTCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatatacataatttcaatttggttatggtaattattttgtaactcatgtgaagGTAGGAGATGGTAAGTCGGACCATTATTGTTGGCAAAGGCCAGAGGAAATGACTACTGATCGTAGGGCTTACAAAATTGACCGGAACAATCCCGGTTCGG
     atacataatttcaatt  TA-rich tract