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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaattgtgatgttttaatctaattttcatgtttgtgaatgttaaattgtatcattgtgttgttgttattaccagAGGATACTTTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTGAGCCTGAACCTGAACCAACTACAGAGATTTTGTTTCTCTGTAGTTATGA

Basic information

species Arabidopsis thaliana
transcript AT4G06634.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86065278|gb|DR361035.1|DR361035
EST:     AGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGGGTCACAG                         AGGATACTTTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTG
genomic: AGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGGGTCACAGgtgaaattgt ... ttattaccagAGGATACTTTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTG
EST: gi|86073043|gb|DR368800.1|DR368800
EST:     AGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGGGTCACAG                         AGGATACTTTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTG
genomic: AGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGGGTCACAGgtgaaattgt ... ttattaccagAGGATACTTTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTG
EST: gi|86073042|gb|DR368799.1|DR368799
EST:     AGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGGGTCACAG                         AGGATACTTTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTG
genomic: AGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGGGTCACAGgtgaaattgt ... ttattaccagAGGATACTTTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTG
EST: gi|86073041|gb|DR368798.1|DR368798
EST:     AGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGGGTCACAG                         AGGATACTTTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTG
genomic: AGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGGGTCACAGgtgaaattgt ... ttattaccagAGGATACTTTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattttcatgtttgtgaatgttaaattgtatcattgtgttgttgttattaccagAGGATACTTTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTGAGCCTGAACCTGAACCAACTACAGAGATTTTGTTTCTCTGTAGTTATGA
 atctaat  putative branch site (score: 3)
                 aatgttaaattgtat  TA-rich tract