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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacatttttttgtcatactttaataattttgtgacataaaaaatttcttcaactgattttttttttgtgtttttaagGTTTTTGCATTTGCGGACAAATACAGAGGAACTTATAGTGCAGGATTAAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTTATCAG

Basic information

species Arabidopsis thaliana
transcript AT4G02290.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02290.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA10G02130.1 (Glycine max), 3'ss of exon 3
----gtataacatttttttgtcatactttaataatt--ttgtgacataaaaaatttcttc-aactgatttttt------ttttgtgtttttaag-
    ||| | | ||  ||     |    |||| |||  || | | | |  ||| | || | |||| | | ||       | || ||||| | ||     || ||    ||||| || || ||||| ||| | || ||    |  || |||||| |||| || || || ||||||||||||||||||||||||
gtaagtaaacctttggttcaatttttgctaattattatttttaatagaccaaactgctcccaactaaatcttaaaagagtattttgtttctgagtgtagGTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164036043|gb|ES013318.1|ES013318
EST:     GAAAATCTGATCCTTCTTACTCCAAAGTCCTCCTCAAACGAGCCATCAGT                         GTTTTTGCATTTGCGGACAAATACAGAGGAACTTATAGTG
genomic: GAAAATCTGATCCTTCTTACTCCAAAGTCCTCCTCAAACGAGCCATCAGTgtataacatt ... tgtttttaagGTTTTTGCATTTGCGGACAAATACAGAGGAACTTATAGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattttgtgacataaaaaatttcttcaactgattttttttttgtgtttttaagGTTTTTGCATTTGCGGACAAATACAGAGGAACTTATAGTGCAGGATTAAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTTATCAG
                            aactgat  putative branch site (score: 3)
                                  ttttttttttgtgttt  CT-rich tract
             ataaaaaatttcttca  TA-rich tract