Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgatttatgttattgatcgttactagtagtacataacaatcagtgttttggttagagtctttagcagttgttttttcttttgtagAACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTGTTGTGAAGTTTCTTTCCAGGGATGACTTCCCCAAACTTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G02150.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02150.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv07s0005g01100.t01 (Vitis vinifera), 3'ss of exon 2
-----gtttgtgatttatg---ttattgatcgt-tactagtagtacataacaatcagtgttttggttagagtctttagcagttgttttttcttttgtagAACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTGTTGTGAAGTTTCTTTCCAGGGATGACTTCCCCAAACTTCAG
      |||||  || | |   ||||   ||   |  ||    |   || |  | || | || |        ||||  || |    |||| ||    |||||  | |||||| |||||||||||| ||||||||||||||||||||||  | ||  |||| |||  |||||||||||||||  | ||||||
gttggatttgtctttcaagaagttataattctccttttaactttggttatctttgagcgattggtagctttgctttctcactctaattttgttcatcagAACGCAGTCCTCCAATCAATGAAGTTATACAATCTGGTGTTGTTCCTCGCTTGGTTGAGTTCCTTGGCAGGGATGACTTCCCACAGCTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124960388|gb|EL035059.1|EL035059
EST:     TCTTGCGGAAACTGCTTTCTATTG                         AACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTG
genomic: TCTTGCGGAAACTGCTTTCTATTGgtttgtgatt ... tcttttgtagAACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acataacaatcagtgttttggttagagtctttagcagttgttttttcttttgtagAACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGTGTTGTTCCTCGTGTTGTGAAGTTTCTTTCCAGGGATGACTTCCCCAAACTTCAG
 acataac  putative branch site (score: 3)
                                     ttgttttttcttttgt  putative PPT
                                     ttgttttttctttt  TA-rich tract