1 5' 3' | 2 5' 3' | 3 5' 3' |
...aggtctttcttttaggttctatgtgtttgctcgcgcttgttaaatgatcaaagctcctgttgtttcataaagctccctgaattgtctttctcttttgcagGGTTCTTCACAAGCAATGCGAGTTTGAATTCTGACAATTCACCTGCACCAAATAATTCAGCTAATAACCGTATGGTCTCTGTTCAGTTCTACAATGAGTT
species | Arabidopsis thaliana |
transcript | AT4G01960.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCGCCATGATAGTGACGGTTATATTCTTCGTCTTCTTAATCTTTCAAG GGTTCTTCACAAGCAATGCGAGTTTGAATTCTGACAATTCACCTGCACCAAEST: gi|125093189|gb|EL150878.1|EL150878
genomic: TTTCGCCATGATAGTGACGGTTATATTCTTCGTCTTCTTAATCTTTCAAGgtaatcacca ... tcttttgcagGGTTCTTCACAAGCAATGCGAGTTTGAATTCTGACAATTCACCTGCACCAA
EST: TTTCGCCATGATAGTGACGGTTATATTCTTCGTCTTCTTAATCTTTCAAG GGTTCTTCACAAGCAA
genomic: TTTCGCCATGATAGTGACGGTTATATTCTTCGTCTTCTTAATCTTTCAAGgtaatcacca ... tcttttgcagGGTTCTTCACAAGCAA
gatcaaagctcctgttgtttcataaagctccctgaattgtctttctcttttgcagGGTTCTTCACAAGCAATGCGAGTTTGAATTCTGACAATTCACCTGCACCAAATAATTCAGCTAATAACCGTATGGTCTCTGTTCAGTTCTACAATGAGTT
ttgtctttctcttttg CT-rich tract
tttcataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtctttcttttaggttctatgtgtttgctcgcgcttgttaaatgatcaaagctcctgttgtttcataaagctccctgaattgtctttctcttttgcagGGTTCTTCACAAGCAATGCGAGTTTGAATTCTGACAATTCACCTGCACCAAATAATTCAGCTAATAACCGTATGGTCTCTGTTCAGTTCTACAATGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - -gatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cataaag