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gtttgaatcttgtttaacttagttcgtaatttgttctgttcttctgatttcttgcactaatcaagattttgatttttcattagGATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT
species | Arabidopsis thaliana |
transcript | AT4G01610.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTACCAAACAGAAACTGGACTCGAAGGTACTTCAG GATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGEST: gi|301501566|gb|HO207106.1|HO207106
genomic: TTACCAAACAGAAACTGGACTCGAAGATACTTCAGgtttgaatct ... ttttcattagGATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAG
EST: TAGAAGCAGAAAGTCTTACCAAACAGAAACTGGACTCGAAGATACTTCAG GATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCTEST: gi|125249748|gb|EL263833.1|EL263833
genomic: TAGAAGCAGAAAGTCTTACCAAACAGAAACTGGACTCGAAGATACTTCAGgtttgaatct ... ttttcattagGATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCT
EST: TAGAAGCAGAAAGTCTTACCAAACAGAAACTGGACTCGAAGATACTTCAG GATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCTEST: gi|124723233|gb|EH814635.1|EH814635
genomic: TAGAAGCAGAAAGTCTTACCAAACAGAAACTGGACTCGAAGATACTTCAGgtttgaatct ... ttttcattagGATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCT
EST: TAGAAGCAGAAAGTCTTACCAAACAGAAACTGGACTCGAAGATACTTCAG GATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGG
genomic: TAGAAGCAGAAAGTCTTACCAAACAGAAACTGGACTCGAAGATACTTCAGgtttgaatct ... ttttcattagGATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGG
atttgttctgttcttctgatttcttgcactaatcaagattttgatttttcattagGATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT
tttttcatt CT-rich tract
attttgatttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaatcttgtttaacttagttcgtaatttgttctgttcttctgatttcttgcactaatcaagattttgatttttcattagGATGAGATTGTGAAGAAAGTCAACGAAAACCCAAACGCTGGATGGAAAGCTGCTATAAATGATCGATTTTCAAACGCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT