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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagtggtcatgcaggaaatgtactctttcacgagtcccatacataccttatggaatttaactgtctgcctccaacttttataacacttagGTTAATGAGGAGGAAGCTTCCCTTCTCGATGTGTTGTGGTTACTGCTTGCAAGCGTCATATTCGTGCCTCTATTTCAGAAAATTCCTGGAG

Basic information

species Arabidopsis thaliana
transcript AT4G00630.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00630.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 1
gtatgagtggtcatgcaggaaatgtactctttcacgagtcccatacataccttatggaatttaactgtctgcctccaacttttataacacttagGTTAATGAGGAGGAAGCTTCCCTTCTCGATGTGTTGTGGTTACTGCTTGCAAGCGTCATATTCGTGCCTCTATTTCAGAAAATTCCTGGAG
      ||   | |  |  |  |  | | ||   | |    |  ||||   |||  | | ||     | |  ||     |||     | || || | |||||||| |||||||||||| | ||  |||| ||||||||||| ||||| || ||||| |||||| |||| ||||||||||||||||
------gtccacttatattagttccaattttgggctaaaggccaacat---ttagtgcactttctcatatctctttcctttt-----ctctcagATGAATGAGGAAGAAGCTTCCCTTTTTGACATGTTATGGTTACTGCTAGCAAGTGTTATATTTGTGCCTATATTCCAGAAAATTCCTGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccatacataccttatggaatttaactgtctgcctccaacttttataacacttagGTTAATGAGGAGGAAGCTTCCCTTCTCGATGTGTTGTGGTTACTGCTTGCAAGCGTCATATTCGTGCCTCTATTTCAGAAAATTCCTGGAG
                                          ttataac  putative branch site (score: 2)
                                       cttttat  CT-rich tract
                                        ttttataacactta  TA-rich tract