Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaccaactatactaatagaagttttattaatccaattttatttgcttttttctgatttacttgattcacaaaacaaaaaaatctcctaataataataagaattggtcaatgtgcagGTTATGGAATGGAGTGCAGTAGCTTCATGAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G62860.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G62860.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA03G37290.1 (Glycine max), 3'ss of exon 1
gtaacaccaactatactaatagaagttttattaatccaattttatttgcttttttctgatttacttgattcacaaaacaaaaaaatctcctaataataataagaattggtcaatgtgcagGTTATGGAATGGAGTGCAGTAGCTTCATGAGAG
|| |   || |  | ||   |    || |    | | |  | | | |   | | |||    || | | |          |  || |           | |||  |||  |     |||||||||||| ||||| |||||| ||||||||||||
gtgaattcatcactcctctaattttttctccctagctagctctctctctctctctctctcctagtaggt-------gtgattaattacttcggcttcattaattatttct-----tgcagGTTATGGTATGGAATGCAGTGGCTTCATGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattcacaaaacaaaaaaatctcctaataataataagaattggtcaatgtgcagGTTATGGAATGGAGTGCAGTAGCTTCATGAGAG
                      tcctaat  putative branch site (score: 2)
        aaaacaaaaaaatctc  TA-rich tract