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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattaattgatgtcttactaaacctctctggtattcatagtcaagacttttaatgttttgttgtttgttacactggttttagGAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTGAGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAA

Basic information

species Arabidopsis thaliana
transcript AT3G61080.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61080.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA03G01960.1 (Glycine max), 3'ss of exon 2
------------------------------------------------------------------------------------------gtatattaattgatgtcttactaaacctctctggtattcatagtcaagacttttaatgttttgttgtttgttacactggttttagGAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTGAGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAA
                                                                                           | | | ||||    |    | ||| || | |  ||| |||   ||||   | |  ||||  |    |||  || ||  | | ||||||||||||||  |||||||||| |  |||||||||||| | |  ||||||||||||||| | || |||||||| || || ||  | || 
gtatagcacatgggagatgggaccttctgtttttggtttcgtggatgaggtttgcctcaggattgaatttttcattttgaatgtgttgcattgtttcaattttattaaagcaaaagctttatattatacatga-caagttctatgttgtt--gaaagttgaaactcta-tatcagGAGTATTGGACCATCCATGTTTGAAGCTGAGGCTCTTGGTTTAGGAGCTATGTATGAAACCGGGACTATCCGTGTACCTAAGCCCTATAAG

upper sequence: AT3G61080.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA07G08570.1 (Glycine max), 3'ss of exon 3
gtatattaattgatgtcttactaaacctctctggtattcatagtcaagacttttaatgttttgttgtttgttacactggttttagGAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTGAGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAA
                                                   ||  |   |   || ||| ||    ||| |    |  |||||||||  |||||||||| | ||||||||||||| | |  ||||||||||||||| | || |||||||| || || ||  | || 
------------------------------------------------gtattggaccatccattttttttt---ttggctc--agCATATTGGACCATCCATGTTTGAAGCAGAGGCTCTTGGTTTAGGAGCTATGTATGAAACCGGGACTATCCGTGTACCTAAGCCCTATAAG

upper sequence: AT3G61080.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv15s0048g01810.t01 (Vitis vinifera), 3'ss of exon 2
--------------gtatattaattgatgtcttactaaacctctctggtattcatagt-caag----acttttaatgttttgttgtttgttac-actggttt-tagGAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTGAGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAA
                | |   |   | |||          |||  ||  ||  | || ||||    | ||| | || ||||   |||  ||| | ||      |||||||| || ||  | ||||||||||| ||||||||||||||||  ||||||||||| |||| | |||||||||| ||||  |||   || 
gtatttggttatcctaacacgtacaaaagtccgttctgctttctggggatttactggtacaagtgctattttaactgatttgagatttcataccattgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTATGTATGAGACCAAATCAATCCGTGTACCAAGGCCATTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggtattcatagtcaagacttttaatgttttgttgtttgttacactggttttagGAGTATTGGACCTGCCATGTTTGAGGGAGAGGCTCTTGGTCTTGAGGCTATGTATGAAACCAGAACAATCCGTGTTCCAAATCCACACAAA
                    ttttaat  putative branch site (score: 3)
                    ttttaatgttttgtt  TA-rich tract