Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtattcattcgtatggaaatagatagaattctcgtgtttttcatcttatgtaacttgtaagactcttgttaagctgttgtcttcttttaacttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG

Basic information

species Arabidopsis thaliana
transcript AT3G60820.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60820.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G39420.1 (Glycine max), 3'ss of exon 2
agtattcattcgtatggaaatagatagaattctcgtgttt--ttcatcttatgtaact-tgtaagact--cttgttaagctgttgtcttcttttaacttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG
     |||    |    ||   || | | || |  |||||  ||  | || | |||   |||||   |    | ||      || | |  | ||     |  ||| || || |    |||  || |||| |||||||| || |||||||| |||||||||||||||||| |     | || || |||
----ctcagcattgcacaag-ggacacattttttttgtttggtttgtgttgtttaaggatgtaaagttaggcttttttttatttatttattgtttcgcctgacagGGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86020247|gb|DR315993.1|DR315993
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020231|gb|DR315977.1|DR315977
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020240|gb|DR315986.1|DR315986
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020259|gb|DR316005.1|DR316005
EST:     TCTACTGGTTACAGTATTCTTAGTCGSGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020241|gb|DR315987.1|DR315987
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020260|gb|DR316006.1|DR316006
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|164191800|gb|EL975884.1|EL975884
EST:     ATTCTTAGTCGCGA-TACNCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: ATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020257|gb|DR316003.1|DR316003
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020242|gb|DR315988.1|DR315988
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020253|gb|DR315999.1|DR315999
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020227|gb|DR315973.1|DR315973
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020263|gb|DR316009.1|DR316009
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020238|gb|DR315984.1|DR315984
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020249|gb|DR315995.1|DR315995
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020270|gb|DR316016.1|DR316016
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020258|gb|DR316004.1|DR316004
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020267|gb|DR316013.1|DR316013
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020229|gb|DR315975.1|DR315975
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020239|gb|DR315985.1|DR315985
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020248|gb|DR315994.1|DR315994
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020243|gb|DR315989.1|DR315989
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGDMGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAG
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGC-GGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAG
EST: gi|86020234|gb|DR315980.1|DR315980
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020262|gb|DR316008.1|DR316008
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020255|gb|DR316001.1|DR316001
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTNNCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|116445800|gb|EG488392.1|EG488392
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020245|gb|DR315991.1|DR315991
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020236|gb|DR315982.1|DR315982
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020244|gb|DR315990.1|DR315990
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCCAGGCTGATGTGAAAG
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCC-AGGCTGATGTGAAAG
EST: gi|86020254|gb|DR316000.1|DR316000
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020230|gb|DR315976.1|DR315976
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020246|gb|DR315992.1|DR315992
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020264|gb|DR316010.1|DR316010
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020265|gb|DR316011.1|DR316011
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020269|gb|DR316015.1|DR316015
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020261|gb|DR316007.1|DR316007
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGSTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020266|gb|DR316012.1|DR316012
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020233|gb|DR315979.1|DR315979
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86023567|gb|DR319320.1|DR319320
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGACCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020256|gb|DR316002.1|DR316002
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020232|gb|DR315978.1|DR315978
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020268|gb|DR316014.1|DR316014
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTMTTMCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020228|gb|DR315974.1|DR315974
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
EST: gi|86020252|gb|DR315998.1|DR315998
EST:     TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACT                         AGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC
genomic: TCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATCCATAAACTgtaagtaccc ... acttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatgtaacttgtaagactcttgttaagctgttgtcttcttttaacttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG
                                        ttttaac  putative branch site (score: 2)
                                ttgtcttcttttaact  CT-rich tract
                                     ttcttttaactttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtattcattcgtatggaaatagatagaattctcgtgtttttcatcttatgtaacttgtaagactcttgttaagctgttgtcttcttttaacttttccagAGCGGACAGAGCTGTTTTGTCTTCCTCTGGCTTCCAGGCTGATGTGAAAGCTTTGCAGAAGGTTCTCAAATCCAGACACTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT