1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaataataactccactctatgtaatcatatgcttgaaggttaatttttgtggtgttgagtggtttgattgattctatagGTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACTTTAGCTATACCCATTTTAGTGCTGGTGATCTTCTCAGAGCAGAAATTAA
species | Arabidopsis thaliana |
transcript | AT3G60180.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGG GTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACTEST: gi|86020351|gb|DR316097.1|DR316097
genomic: CGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGGgtaataataa ... gattctatagGTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACT
EST: CGAACATGAAAGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGG GTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACTEST: gi|116486310|gb|EG528902.1|EG528902
genomic: CGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGGgtaataataa ... gattctatagGTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACT
EST: CGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGG GTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACTEST: gi|86020352|gb|DR316098.1|DR316098
genomic: CGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGGgtaataataa ... gattctatagGTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACT
EST: CGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGG GTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACTEST: gi|116486314|gb|EG528906.1|EG528906
genomic: CGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGGgtaataataa ... gattctatagGTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACT
EST: CGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGG GTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACT
genomic: CGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGGgtaataataa ... gattctatagGTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACT
tcatatgcttgaaggttaatttttgtggtgttgagtggtttgattgattctatagGTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACTTTAGCTATACCCATTTTAGTGCTGGTGATCTTCTCAGAGCAGAAATTAA
gattgat putative branch site (score: 4)
ttaatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataataactccactctatgtaatcatatgcttgaaggttaatttttgtggtgttgagtggtttgattgattctatagGTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACTTTAGCTATACCCATTTTAGTGCTGGTGATCTTCTCAGAGCAGAAATTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG