Sequence
atgc intronic sequence ATGC exonic sequencegtagaggcttaataagttaccatttcccaggatactataatgttgtgtggtggatggaaacattaaactgttgtgttattcagGTGAGAGATGAACTCGAGCATTTGTTAGATGACAACGAAGACATGGCTGACTTATACTTAACAAGGAAATGGATCCAGAACCAGCAAACCGAGGCAATAC
Basic information
species | Arabidopsis thaliana |
transcript | AT3G58970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G58970.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA05G30180.1 (Glycine max), 3'ss of exon 2
---gtagaggcttaat--aagttaccatttcccaggatactataatg-------ttgtgtggtggatggaaacattaaactgt-----tgtgttattcagGTGAGAGATGAACTCGAGCATTTGTTAGATGACAACGAAGACATGGCTGACTTATACTTAACAAGGAAATGGATCCAGAACCAGCAAACCGAGGCAATAC
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tatatagaaaatttattgcaggcggttttaccttgtatgtgacgatgcattccttcatctttgagatatcatacttaaagtgtatgaccctctttcacagGTGCGAGATGAAATTGAACATCTGTTAGATGACAACGAAGATATGGCACAACTATATTTGACGAGGAAGTGGTTACAGAATCAACAATTTGAGGAGGCTC
upper sequence: AT3G58970.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv12s0034g02550.t01 (Vitis vinifera), 3'ss of exon 2
-------------gtagaggcttaataagttaccatttcccaggatactataatgttgtgtggtggatgga---aacattaaactgttgtgttat-tcagGTGAGAGATGAACTCGAGCATTTGTTAGATGACAACGAAGACATGGCTGACTTATACTTAACAAGGAAATGGATCCAGAACCAGCAAACCGAGGCAATAC
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aaaaaacaagcatatttgaccttagaatattgcaaattttgctgctgcatcatctacatattgtaactttattgaggaaggaatatctgttcaatgtcagGTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGATTTATACTTAACAAGGAAGTGGATCCAGAATCAGCAAAATGAGGCTTTGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|163973621|gb|ES042705.1|ES042705EST: AATCTCACCCGCTTGCTAGCTCGGGTACAAAAG GTGAGAGATGAACTCGAGCATTTGTTAGATGACAACGAAGACATGGCTGAC
genomic: AATCTCACCCGCTTGCTAGCTCGTGTACAAAAGgtagaggctt ... tgttattcagGTGAGAGATGAACTCGAGCATTTGTTAGATGACAACGAAGACATGGCTGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggatactataatgttgtgtggtggatggaaacattaaactgttgtgttattcagGTGAGAGATGAACTCGAGCATTTGTTAGATGACAACGAAGACATGGCTGACTTATACTTAACAAGGAAATGGATCCAGAACCAGCAAACCGAGGCAATAC
aaacattaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagaggcttaataagttaccatttcccaggatactataatgttgtgtggtggatggaaacattaaactgttgtgttattcagGTGAGAGATGAACTCGAGCATTTGTTAGATGACAACGAAGACATGGCTGACTTATACTTAACAAGGAAATGGATCCAGAACCAGCAAACCGAGGCAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA