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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgatatactcaatatatgttcttgctttaaaaacagaatcgaaaaaatggtttttgaaggacttgtgtaatataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGTGCCGTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACA

Basic information

species Arabidopsis thaliana
transcript AT3G55610.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55610.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA18G03830.1 (Glycine max), 3'ss of exon 2
-----------------gtattttga--tatactcaatatatgttcttgctttaaaaacagaatcgaaaaaatggtttttgaaggacttgtgtaatataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGTGCCGTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACA
                  | ||||||  | |  |   | | |||||  |   ||||||  | ||    |   |||  | ||     | | || ||   |||  ||| ||  |||| | || ||   ||| | |||| | |||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||||| | ||||
gttgcttttgtatatttttgttttgagtttttttttttgtttgttcaaggaataaaaattggattttgagtttggcatgtgtgacccatttgaaaatcaatggcagATTAAGGAGCTGAATTCTCTTGGTTATGAGATTATTTTGGTGTCATCAGGTGCTGTTGGCCTTGGTCGCCAAAGGCTTAGATACAGAAAATTAATTAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064871|gb|DR360628.1|DR360628
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|86064874|gb|DR360631.1|DR360631
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|86064868|gb|DR360625.1|DR360625
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|152033743|gb|BP562130.3|BP562130
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|86064870|gb|DR360627.1|DR360627
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|86064867|gb|DR360624.1|DR360624
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT
EST: gi|86064869|gb|DR360626.1|DR360626
EST:     GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAG                         CTTGCGGAGTTAAACTCAGATGGATTTGAGGNCATTTTGGTGTCATCTGGT
genomic: GGAAAGGTGGAAGATTGGCTCTTGGACGTTTAGGAGCTATCTGTGAACAGgtattttgat ... ataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaaaacagaatcgaaaaaatggtttttgaaggacttgtgtaatataatatcagCTTGCGGAGTTAAACTCAGATGGATTTGAGGTCATTTTGGTGTCATCTGGTGCCGTTGGTCTTGGTCGACAAAGGCTTCGATACAGACAATTAGTCAACA
                                    ttgtgtaatataatat  TA-rich tract