1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatgtgcttgtttgtctgttatttgccaatgatcaaactttccttgaatgagatttgttaccagtagtgtaaatggtttaatgttccattatttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGAAAGCAGTGAAATCTGGCCAAATCGTTAAAAAGCCTGCGAAGAAGATCAG
species | Arabidopsis thaliana |
transcript | AT3G55280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAATCTATCTTGAGCAATGTCTCCAGCTAAAG TTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGAEST: gi|152035088|gb|BP844212.2|BP844212
genomic: AGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
EST: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAG TTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTGGAAAGCTGCGAEST: gi|116415207|gb|EG457799.1|EG457799
genomic: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
EST: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAG CTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGAEST: gi|86083163|gb|DR378922.1|DR378922
genomic: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
EST: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAG TTGATGTCACCAAGAAAGCCGACCCTAAGGCTAEST: gi|152033917|gb|BP819853.2|BP819853
genomic: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTA
EST: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAG TTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGAEST: gi|86018728|gb|DR314474.1|DR314474
genomic: GTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
EST: GCTCAGGTTTCGTGAAAAG-ATCTATCTTGAGCAATGTCTCCAGCTAAAG TTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGAEST: gi|124939812|gb|EL016323.1|EL016323
genomic: GCTCAGGTTTCGTGAAAAGAATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGA
EST: AATCTATCTTGAGCAATGTCTCCAGCTAAAG TTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAAGCTGCG
genomic: AATCTATCTTGAGCAATGTCTCCAGCTAAAGgtacgccttt ... atttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAA-GCTGCG
gaatgagatttgttaccagtagtgtaaatggtttaatgttccattatttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGAAAGCAGTGAAATCTGGCCAAATCGTTAAAAAGCCTGCGAAGAAGATCAG
gtttaat putative branch site (score: 4)
ttattttt putative PPT
attattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtgcttgtttgtctgttatttgccaatgatcaaactttccttgaatgagatttgttaccagtagtgtaaatggtttaatgttccattatttttgcagTTGATGTCACCAAGAAAGCCGACCCTAAGGCTAAGGCTTTGAAAGCTGCGAAAGCAGTGAAATCTGGCCAAATCGTTAAAAAGCCTGCGAAGAAGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA