Sequence
atgc intronic sequence ATGC exonic sequencegtaataaaccaaaacccatttgcttttcctccaaatcaaaagaagtcccttgattttgaatttgacactttttgcatcttgtaacagGACGTGATAGATGGAGATCTGTGTGAGCAGTTCCCGACACTCCCAATGGACTTGCAGAGGAAAATAGCAGACGAGCTGGATAGAACACCTGCGGAGATTC
Basic information
species | Arabidopsis thaliana |
transcript | AT3G55200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124813106|gb|EH897972.1|EH897972EST: TCTGCGGGAGAGACCACATGGCTTACAGATCTGCATATTTTCCGGTCAAG GACGTGATAGATGGAGATCTGTGTG
genomic: TCTGCGGGAGAGACCACATGGCTTACAGATCTGCATATTTTCCGGTCAAGgtaataaacc ... cttgtaacagGACGTGATAGATGGAGATCTGTGTG
EST:
gi|125310836|gb|EL324921.1|EL324921EST: TGCGGGAGAGACCACATGGCTTACAGATCTGCATATTTTCCGGTCAAG GACGTGATAGA
genomic: TGCGGGAGAGACCACATGGCTTACAGATCTGCATATTTTCCGGTCAAGgtaataaacc ... cttgtaacagGACGTGATAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatcaaaagaagtcccttgattttgaatttgacactttttgcatcttgtaacagGACGTGATAGATGGAGATCTGTGTGAGCAGTTCCCGACACTCCCAATGGACTTGCAGAGGAAAATAGCAGACGAGCTGGATAGAACACCTGCGGAGATTC
atttgac putative branch site (score: 4)
ttgattttgaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaataaaccaaaacccatttgcttttcctccaaatcaaaagaagtcccttgattttgaatttgacactttttgcatcttgtaacagGACGTGATAGATGGAGATCTGTGTGAGCAGTTCCCGACACTCCCAATGGACTTGCAGAGGAAAATAGCAGACGAGCTGGATAGAACACCTGCGGAGATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT