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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttttgatcttcgagcttaatcatttcttctattatacggtagtgactgtaaaatttgattgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAA

Basic information

species Arabidopsis thaliana
transcript AT3G53870.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53870.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA09G28440.1 (Glycine max), 3'ss of exon 2
----gtatgtttttg--atcttc----gagctt----aatcatttcttctattatacggtagt------gactgtaaaattt-gattgtat-ttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAA
    || ||||| ||  | ||||     |  ||     |||   | |||  | |||   ||||       | |||    ||| |||||||| |  |||||||||||| ||||||||||||||| | || ||  | || |||||||| ||||| ||||| |   ||||||| ||||||||||| |||||||| |||||
gtgcgtttgtttctgtaaccttccgttaaatttgtgggatcgaattttcattcataaattagttccatgaattgtgttgttttgattgtatatatagGTGAGAAGGGAAGGAGAATTAGGGAACTTACCTCAGTGGTGCAGAAGAGGTTCAAATTTCCCGAGAACAGTGTCGAGCTTTATGCTGAGAAGGTCAACAA

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA20G21190.1 (Glycine max), 3'ss of exon 2
---------------gtatgtttttgatcttcgagcttaatcatttcttctattatacggtagtgactgtaaaat---ttgattgtattt-cagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAA
                | |||| | |||  |     ||  ||   | |  ||||  |   |  |  || |    |   ||  ||||||||  |||||||||||| |||||||| |||||| | || ||  | ||||||||||| ||||||||||| |   |||||||||| |||||||| || ||||| |||||
gttcgtgtgcctctgttgtgttctagattcttctattttttcccctttggtattgaatattgatttcttttttcttggttatttgtatttatagGTGAGAAGGGAAGGAGAATCAGGGAACTTACCTCGGTGGTTCAGAAGAGGTTCAAGTTTCCCGAGAACAGTGTTGAACTTTATGCTGAAAAGGTCAACAA

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA10G26890.1 (Glycine max), 3'ss of exon 2
------------------------------gtatgtttttgatcttcgagcttaatcatttcttctattatacgg---tagtgactgtaaaatttgattgtattt-cagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAA
                               | | |||||  | ||  | |    |    |    ||||  | |    | ||   | |    ||   |||||||   |||||||||||| |||||||| |||||| | || ||  | ||||||||||| ||||||||||| |   |||||||||| |||||||| || ||||| |||||
gttcgtgtgcccgcgttctgttctggaatcttctatttttctttttttacccctttggaattgaatattggaagtttttggtttttttttggttattttgtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTTCAAGTTTCCCGAGAACAGTGTTGAACTTTATGCTGAAAAGGTCAACAA

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA10G26790.1 (Glycine max), 3'ss of exon 2
---------------------------------------gtatgtttttgatcttcgagcttaatcatttct--tctattatacggtagtgactgtaaaatttgattgtattt-cagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAA
                                          | ||||    ||| |   || |  |||     | | |  |  | |  |   | |    ||   |||||||   |||||||||||| |||||||| |||||| | || ||  | ||||||||||| ||||||||||| |   ||||||| || |||||||| || ||||| |||||
gttcgtgtgcccgtgttctgttctggaatcttctatttttcttattttacccctttggaattgaatattggaagtttttgttttgtttttttttttttggttattttgtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTTCAAGTTTCCCGAGAACAGTGTCGAACTTTATGCTGAAAAGGTCAACAA

upper sequence: AT3G53870.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 2
------gtatgtttttgatc-ttcgagcttaatcatttcttctattatacggtagtgactgtaaaatttga----ttgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAA
        |||  ||||||  |||  |  |   | ||||   | |  |    |  ||||| |    |||      |||  ||| ||||||||| |||||||||||||| |||||||| ||| |||| || ||| ||||||||||||| |   ||||||| ||| | ||||||||||| || |||||
gtgattcaatggctttgattattcttgagttcgcgtttcagatttgttggttttctgactctccttttttgctttttggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGATTCAAGTTTCCTGAGAACAGTGTGGAGTTGTATGCCGAGAAAGTCAACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064308|gb|DR360065.1|DR360065
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GGGAGAAGGGGAGGAGAATTA
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTA
EST: gi|116450432|gb|EG493024.1|EG493024
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|47829794|gb|CK119478.1|CK119478
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|164199335|gb|ES143470.1|ES143470
EST:     GGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: GGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|47832087|gb|CK121771.1|CK121771
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|86064329|gb|DR360086.1|DR360086
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|86067841|gb|DR363598.1|DR363598
EST:     TATGAGGACTGAGATTATCATCAGAGCTNCACGTNCTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCGCTTGTTCA
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCA
EST: gi|164178593|gb|ES188482.1|ES188482
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGA
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGA
EST: gi|125016791|gb|EL089060.1|EL089060
EST:     TACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: TACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|116410822|gb|EG453414.1|EG453414
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|164002589|gb|ES149531.1|ES149531
EST:     TATNAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCC
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCC
EST: gi|125252498|gb|EL266583.1|EL266583
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGG
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGG
EST: gi|164195836|gb|ES121845.1|ES121845
EST:     GAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: GAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|86064321|gb|DR360078.1|DR360078
EST:     ATGAGGACTGAGATTATCATCANAGCTACACCGTACTCAGAATGTTCTCC                         N
genomic: ATGAGGACTGAGATTATCATCAGAGCTACAC-GTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcag-
EST: gi|86064321|gb|DR360078.1|DR360078
EST:     ATGAGGACTGAGATTATCATCANAGCTACACCGTACTCAGAATGTTCTCC                         N
genomic: ATGAGGACTGAGATTATCATCAGAGCTACAC-GTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcag-
EST: gi|164067178|gb|ES061787.1|ES061787
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGGAGGAGAATTAGGGA
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGG-AGGAGAATTAGGGA
EST: gi|125013642|gb|EL085911.1|EL085911
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGA
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGA
EST: gi|125241136|gb|EL255221.1|EL255221
EST:     ACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: ACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|125078172|gb|EL140665.1|EL140665
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTTTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTT
EST: gi|86067839|gb|DR363596.1|DR363596
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGGTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAA
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAA
EST: gi|164158431|gb|ES056858.1|ES056858
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGA
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGA
EST: gi|86064275|gb|DR360032.1|DR360032
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCANAAGAGAT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|152035033|gb|BP842662.2|BP842662
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCCTTGTTCAGAAGAGA
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCC-TTGTTCAGAAGAGA
EST: gi|116445202|gb|EG487794.1|EG487794
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|164183363|gb|ES118093.1|ES118093
EST:     AGATTATCATCAGAGCTACACGTACTTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: AGATTATCATCAGAGCTACACGTAC-TCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|124906253|gb|EH980333.1|EH980333
EST:     TCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: TCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|86067837|gb|DR363594.1|DR363594
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGNTCTCG                         GNGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGNTCAGAAGAGAT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|86064276|gb|DR360033.1|DR360033
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGNTCTCG                         GTGAGAAGGGNAGGAGAATTAGGGAATTGACTTCCATTGTTCAGAAGAGAT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|164104445|gb|EL975111.1|EL975111
EST:     TCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGA
genomic: TCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGA
EST: gi|163969791|gb|ES057337.1|ES057337
EST:     GAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: GAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|124744203|gb|EH835365.1|EH835365
EST:     ACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTAGACTTCCCTTGTTCAGAAGAGA
genomic: ACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATT-GACTTCCCTTGTTCAGAAGAGA
EST: gi|125040871|gb|EL113140.1|EL113140
EST:     CATCAGAGCTACACGTACTCAGAANGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: CATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|116449038|gb|EG491630.1|EG491630
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|86064325|gb|DR360082.1|DR360082
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGA
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGA
EST: gi|164226700|gb|EL985086.1|EL985086
EST:     AGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: AGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|164146290|gb|ES132577.1|ES132577
EST:     AGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: AGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|116454700|gb|EG497292.1|EG497292
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCG                         GTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGAT
EST: gi|86067836|gb|DR363593.1|DR363593
EST:     TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCATAATGTTCTCG                         GCGAGAAGGGGAGGNGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGA
genomic: TATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgtatgttttt ... tgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaatcatttcttctattatacggtagtgactgtaaaatttgattgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAA
                                  taaaatttgattgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtttttgatcttcgagcttaatcatttcttctattatacggtagtgactgtaaaatttgattgtatttcagGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT