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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgaattgtccacatattgtattggtatcaatggactgttcttttgttgttttcataagatactgcgaattgtgttaactagtaagaaattaagatttttatttgtgtgcttgagctaagtttcagctgatgtgtttttttctttcagGTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGTGGTTTAGTTCCCAATTTTGTTTACCCAAACATGTTCTATAATGGCCTTCCTCGTCAGG

Basic information

species Arabidopsis thaliana
transcript AT3G53570.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073146|gb|DR368903.1|DR368903
EST:     TGACTTGGGATGCTGCTCCGCCTCTTCTTCCTCCTCCTCCTCCACCCACG                         GTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGTGGTTTAGTT
genomic: TGACTTGGGATGCTGCTCCGCCTCTTCTTCCTCCTCCTCCTCCACCCACGgtaacgaatt ... tttctttcagGTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGTGGTTTAGTT
EST: gi|86073147|gb|DR368904.1|DR368904
EST:     TGACTTGGGATGCTGCTCCGCCTCTTCTTCCTCCTCCTCCTCCACCCACG                         GTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGTGGTTTAGTT
genomic: TGACTTGGGATGCTGCTCCGCCTCTTCTTCCTCCTCCTCCTCCACCCACGgtaacgaatt ... tttctttcagGTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGTGGTTTAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttttatttgtgtgcttgagctaagtttcagctgatgtgtttttttctttcagGTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGTGGTTTAGTTCCCAATTTTGTTTACCCAAACATGTTCTATAATGGCCTTCCTCGTCAGG
                               agctgat  putative branch site (score: 4)
                                     tgtgtttttttctttc  CT-rich tract
                                         tttttttcttt  TA-rich tract