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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttgatttgatttactctctctacaattcctgagagtctgtgagctcgaaagttcatttccattagttttgttaattcaatttcagGTCTATTGGCACTAATATTGTTGGTAGCTATTTTGGGAATCTGTGCAAAACTTGGCATTGTATCACCTCTT

Basic information

species Arabidopsis thaliana
transcript AT3G52940.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164049587|gb|ES113282.1|ES113282
EST:     TCGCGGCGTCCTTTTATCAGATGGCTCTCAACTTCGTTACCGATGCAATG                         GTCTATTGGCAC
genomic: TCGCGGCGTCCTTTTATCAGATGGCTCTCAACTTCGTTACCGATGCAATGgtatatttga ... tcaatttcagGTCTATTGGCAC
EST: gi|124878585|gb|EH958022.1|EH958022
EST:     CGCGGCGTCCTTTTATCAGATGGCTCTCAACTTCGTTACCGATGCAAATG                         GTCTATTGGCACTAATATTGTTGGT
genomic: CGCGGCGTCCTTTTATCAGATGGCTCTCAACTTCGTTACCGATGCAA-TGgtatatttga ... tcaatttcagGTCTATTGGCACTAATATTGTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagagtctgtgagctcgaaagttcatttccattagttttgttaattcaatttcagGTCTATTGGCACTAATATTGTTGGTAGCTATTTTGGGAATCTGTGCAAAACTTGGCATTGTATCACCTCTT
                                      tgttaat  putative branch site (score: 3)
                              attagttttgttaatt  TA-rich tract