1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagcttcctctcgatttggaaaactgtgattatgcagtgtgtcttgtaacctatgatatgatgatccttatgtggacttgtcttctctaatcctcacaccttatttactctatatggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAG
species | Arabidopsis thaliana |
transcript | AT3G52880.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|124929182|gb|EL006753.1|EL006753
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCEST: gi|86038353|gb|DR334108.1|DR334108
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCC
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038384|gb|DR334139.1|DR334139
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038379|gb|DR334134.1|DR334134
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038373|gb|DR334128.1|DR334128
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038364|gb|DR334119.1|DR334119
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAANAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038359|gb|DR334114.1|DR334114
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038370|gb|DR334125.1|DR334125
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAANAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038368|gb|DR334123.1|DR334123
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|124764747|gb|EH854877.1|EH854877
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGEST: gi|86038377|gb|DR334132.1|DR334132
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATG
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|164165133|gb|ES049422.1|ES049422
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|152033821|gb|BP816817.2|BP816817
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGGTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038378|gb|DR334133.1|DR334133
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTMGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038374|gb|DR334129.1|DR334129
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038367|gb|DR334122.1|DR334122
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GNGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038358|gb|DR334113.1|DR334113
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GNGGCTCCATATGAACGCCCTGCACTTAEST: gi|86038380|gb|DR334135.1|DR334135
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038376|gb|DR334131.1|DR334131
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTN-AACCAGGAGAATTGGCTGTTATCTCGAAANAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTMCTGAAEST: gi|86038355|gb|DR334110.1|DR334110
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038356|gb|DR334111.1|DR334111
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038354|gb|DR334109.1|DR334109
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCG-AANAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038381|gb|DR334136.1|DR334136
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038383|gb|DR334138.1|DR334138
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038357|gb|DR334112.1|DR334112
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038369|gb|DR334124.1|DR334124
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038361|gb|DR334116.1|DR334116
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038362|gb|DR334117.1|DR334117
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038382|gb|DR334137.1|DR334137
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAANAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTMCTGAAEST: gi|301501396|gb|HO206936.1|HO206936
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAEST: gi|86038375|gb|DR334130.1|DR334130
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
EST: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCG GTGGCTCCATATGAACGCMCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
genomic: CCAATCAAGGGGTTCAACCAGGAGAATTGGCTGTTATCTCGAAAGAGGCGgtaagcttcc ... ggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAA
tgtggacttgtcttctctaatcctcacaccttatttactctatatggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAG
tcctcac putative branch site (score: 2)
ttatttactctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttcctctcgatttggaaaactgtgattatgcagtgtgtcttgtaacctatgatatgatgatccttatgtggacttgtcttctctaatcctcacaccttatttactctatatggtggcttagGTGGCTCCATATGAACGCCCTGCACTTAGCAAGGGGTATTTGTTTCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG