Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcttatacttgttatatatctatttgattgttggaattgtggagatatatcaaagaagattatgagaaactaaactgcatcttttatggcttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG

Basic information

species Arabidopsis thaliana
transcript AT3G52300.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G52300.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os08g37320.1 (Oryza sativa), 3'ss of exon 2
-----ttcttatacttgttatatatctatttgattgttggaattgtggagatatatcaaagaagattatgagaaactaaactgcatcttttatggcttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG
       |  || |  ||  ||  | |  || ||| ||    ||       | | |         || |    ||  | |||     |   ||   |    ||||||||||| || || |||||||||||||  || |||||| | ||||||||||||||||||||  ||
aattgaccccatgcaagtattacttttgcttaattcttctggtttatatagtttgttccgcctacttgtagtgaag-atactaagcatgaaataaat----gcagGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTG

upper sequence: AT3G52300.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G157018_T01 (Zea mays), 3'ss of exon 2
-ttcttatacttgttatatatctatttgattgttggaattgtggagatatatcaaagaagattatgagaaactaaactgcatcttttatggcttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG
 |||  ||  |  || |   ||  | ||  ||      || |  | |||  ||        || |          |     |    |     |   ||||||||| ||||| || |||||||| |||| |||||||||  | ||||||||||||||||||||| ||
cttcacatgatgattgttggtcc-tgtgtatgccatttttttctatataattctgttctctttgtccactttctgaggtagtaaacttgaaataaatgcagGCATCGAGATCCCGAAGTACGTCGACACAGTTACTCCCCAGTACAAGCCAAAGTTTGATGCTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86024149|gb|DR319902.1|DR319902
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024151|gb|DR319904.1|DR319904
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024131|gb|DR319884.1|DR319884
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86078461|gb|DR374218.1|DR374218
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024108|gb|DR319861.1|DR319861
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024111|gb|DR319864.1|DR319864
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024139|gb|DR319892.1|DR319892
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|124804620|gb|EH892315.1|EH892315
EST:     TGTTGACAAGTACAAGGAAGCTTATGACTA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCA
genomic: TGTTGACAAGTACAAGGAAGCTTATGAC-Agtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCA
EST: gi|86024104|gb|DR319857.1|DR319857
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024106|gb|DR319859.1|DR319859
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|124791275|gb|EH880954.1|EH880954
EST:     CATTGTTGACAAGTACAAGGAAGCTTATTGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCA
genomic: CATTGTTGACAAGTACAAGGAAGCTTA-TGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCA
EST: gi|86024098|gb|DR319851.1|DR319851
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024119|gb|DR319872.1|DR319872
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024133|gb|DR319886.1|DR319886
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|124836268|gb|EH920707.1|EH920707
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAA
EST: gi|86024097|gb|DR319850.1|DR319850
EST:     GAAGGGTATTGGAVCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024140|gb|DR319893.1|DR319893
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024152|gb|DR319905.1|DR319905
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024100|gb|DR319853.1|DR319853
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86078506|gb|DR374263.1|DR374263
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024113|gb|DR319866.1|DR319866
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024117|gb|DR319870.1|DR319870
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024114|gb|DR319867.1|DR319867
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024123|gb|DR319876.1|DR319876
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024118|gb|DR319871.1|DR319871
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024112|gb|DR319865.1|DR319865
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024124|gb|DR319877.1|DR319877
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024144|gb|DR319897.1|DR319897
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024116|gb|DR319869.1|DR319869
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024150|gb|DR319903.1|DR319903
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024142|gb|DR319895.1|DR319895
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|125028388|gb|EL100657.1|EL100657
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACT
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACT
EST: gi|86024105|gb|DR319858.1|DR319858
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024125|gb|DR319878.1|DR319878
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024115|gb|DR319868.1|DR319868
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024101|gb|DR319854.1|DR319854
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024102|gb|DR319855.1|DR319855
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|125295947|gb|EL310032.1|EL310032
EST:     TACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTCACTCCTGAATACAAGCCAA
genomic: TACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024099|gb|DR319852.1|DR319852
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024128|gb|DR319881.1|DR319881
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024126|gb|DR319879.1|DR319879
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024143|gb|DR319896.1|DR319896
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024134|gb|DR319887.1|DR319887
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCA
EST: gi|86024109|gb|DR319862.1|DR319862
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|125321717|gb|EL335802.1|EL335802
EST:     GAAGGGTNTTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCC
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATT-CCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCC
EST: gi|86024153|gb|DR319906.1|DR319906
EST:     AAGGGTATTGGAMSCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: AAGGGTATTGGAG-CTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024107|gb|DR319860.1|DR319860
EST:     GAAGGGTATTGGAGCTGNNNTTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCCAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024121|gb|DR319874.1|DR319874
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024155|gb|DR319908.1|DR319908
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024136|gb|DR319889.1|DR319889
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024137|gb|DR319890.1|DR319890
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024148|gb|DR319901.1|DR319901
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|164058238|gb|ES013449.1|ES013449
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAG
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAG
EST: gi|125187605|gb|EL202559.1|EL202559
EST:     GTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024127|gb|DR319880.1|DR319880
EST:     GAAGGGTATTGGWGCTGGCATTGTTGACAAGTACAAGGAAGCTTANGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024129|gb|DR319882.1|DR319882
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|125106687|gb|EL160076.1|EL160076
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACT
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACT
EST: gi|301502222|gb|HO207762.1|HO207762
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024145|gb|DR319898.1|DR319898
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024110|gb|DR319863.1|DR319863
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024157|gb|DR319910.1|DR319910
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024154|gb|DR319907.1|DR319907
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024135|gb|DR319888.1|DR319888
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86082095|gb|DR377854.1|DR377854
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024122|gb|DR319875.1|DR319875
EST:     AAGGGTATTGGAGGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: AAGGGTATTGGA-GCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024158|gb|DR319911.1|DR319911
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024130|gb|DR319883.1|DR319883
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024103|gb|DR319856.1|DR319856
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024141|gb|DR319894.1|DR319894
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
EST: gi|86024120|gb|DR319873.1|DR319873
EST:     GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACA                         GCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA
genomic: GAAGGGTATTGGAGCTGGCATTGTTGACAAGTACAAGGAAGCTTATGACAgtaagtttta ... cttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatcaaagaagattatgagaaactaaactgcatcttttatggcttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG
                       aactaaa  putative branch site (score: 2)
                                  atcttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcttatacttgttatatatctatttgattgttggaattgtggagatatatcaaagaagattatgagaaactaaactgcatcttttatggcttgctgcagGCATTGAGATTCCAAAGTACGTTGACAAAGTTACTCCTGAATACAAGCCAAAGTTTGATGCTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - -caaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa