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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttccatatcacaaattgaggacaagatttatttttatagaaaaagtcagtgtgatcgtaggcattcaaagtttaaggttataatttagttcgtttcgtatgtgttagattgttagtctagtttgagattttgtctgttctacattttcagGTCTGCCTCTATAGACTTGATTACAAGAATGGATGATAGTTCTCCAAAGCCCATT

Basic information

species Arabidopsis thaliana
transcript AT3G52200.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876419|gb|AU237250.1|AU237250
EST:     AATGGACTATACCACTTGGACGACAAAATTAGTAGCAGTAATGGTGTGAG                         GTCTGCCTCTATAGACTTGATTACAAGAATGGATGATAGTTCTCCAAAGCC
genomic: AATGGACTATACCACTTGGACGACAAAATTAGTAGCAGTAATGGTGTGAGgtatgtgttc ... acattttcagGTCTGCCTCTATAGACTTGATTACAAGAATGGATGATAGTTCTCCAAAGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtatgtgttagattgttagtctagtttgagattttgtctgttctacattttcagGTCTGCCTCTATAGACTTGATTACAAGAATGGATGATAGTTCTCCAAAGCCCATT
                                              cattttc  CT-rich tract
                                            tacatttt  TA-rich tract