1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggagttgtcttcaaccatttttggacactgtctaccccattgtctatacaaattttgttttacggtctagatggtaattaaaactttatttggttttcagGTTATTTGAGCTTGTCGGAGGAGCAACAGGTATTACGATCTTAGCCAAAGAACTCCTTCCTCTCCAAAATGCTGGACTACAAAAGTGTATGGCCTTCAGC
species | Arabidopsis thaliana |
transcript | AT3G52190.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACCCTGGTGGGGATTACTTTGTTTGCTCAACCTCCAAAGGTGGTTGCAA GTTATTTGAGCTTGTCGGAGGAGCAACAGGTATTACGATCTTAGCCAAAGA
genomic: CACCCTGGTGGGGATTACTTTGTTTGCTCAACCTCCAAAGGTGGTTGCAAgtacgtttct ... tggttttcagGTTATTTGAGCTTGTCGGAGGAGCAACAGGTATTACGATCTTAGCCAAAGA
atacaaattttgttttacggtctagatggtaattaaaactttatttggttttcagGTTATTTGAGCTTGTCGGAGGAGCAACAGGTATTACGATCTTAGCCAAAGAACTCCTTCCTCTCCAAAATGCTGGACTACAAAAGTGTATGGCCTTCAGC
ctttattt CT-rich tract
taattaaaactttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagttgtcttcaaccatttttggacactgtctaccccattgtctatacaaattttgttttacggtctagatggtaattaaaactttatttggttttcagGTTATTTGAGCTTGTCGGAGGAGCAACAGGTATTACGATCTTAGCCAAAGAACTCCTTCCTCTCCAAAATGCTGGACTACAAAAGTGTATGGCCTTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - tcaacca
- - - - - - - - -tttttgg
- - - - - - - - - - - - - - - - -accccat
- - - - - - - - - - - - - - - - - - - - - - -atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attaaaa