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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggaaaatgtttttcaacatttctctatgtactgtgttgggatccaacagtgatttttatatgctggtttcgatttcattcatatatagGAACATACTTGCTAGTTATAACGTCTCGGGAGGAAGTTGGAAATTTTCTCGGTTTACCGATTTTTAGAGTTACGGCTATGAAATTCTTACCTTGCAATGA

Basic information

species Arabidopsis thaliana
transcript AT3G51830.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068255|gb|DR364012.1|DR364012
EST:     TAGAGTCTCTACTATCTATGGCGTAGGAGGAACTATTAGGCTCTTAGCAG                         GAACATACTTGCTAGTTATAACGTCTCGGGAGGAAGTTGGAAATTTTCTCG
genomic: TAGAGTCTCTACTATCTATGGCGTAGGAGGAACTATTAGGCTCTTAGCAGgtggaaaatg ... tcatatatagGAACATACTTGCTAGTTATAACGTCTCGGGAGGAAGTTGGAAATTTTCTCG
EST: gi|164221824|gb|ES151474.1|ES151474
EST:     TAGAGTCTCTACTATCTATGGCGTAGGAGGAACTATTAGGCTCTTAGCAG                         GAACATACTTGCTAGTTATAACGTCTCGGGAGGAAGT
genomic: TAGAGTCTCTACTATCTATGGCGTAGGAGGAACTATTAGGCTCTTAGCAGgtggaaaatg ... tcatatatagGAACATACTTGCTAGTTATAACGTCTCGGGAGGAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgggatccaacagtgatttttatatgctggtttcgatttcattcatatatagGAACATACTTGCTAGTTATAACGTCTCGGGAGGAAGTTGGAAATTTTCTCGGTTTACCGATTTTTAGAGTTACGGCTATGAAATTCTTACCTTGCAATGA
                                       tttcattc  CT-rich tract
                                      atttcattcatatata  TA-rich tract