1 5' 3' | 2 5' 3' |
...actaattgagttggattataatgttagatgagcttacttagcaaacgcacaagtagtggtggaacttgtaaagaagctgaaaaggatttgcattttgcagGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAGGTGTTCTGAAGCAACTAGAAGAAGAAGAAATTGATATCATTGTGG
species | Arabidopsis thaliana |
transcript | AT3G51260.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAG GTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACEST: gi|164065239|gb|ES148851.1|ES148851
genomic: AAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGgttagtttgc ... cattttgcagGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGAC
EST: AAGCGCTGGCCAAGAAACTGTTAAGTCTTGCTATCCGTGCTCTGCTTGAG GTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACEST: gi|116393479|gb|EG436071.1|EG436071
genomic: AAGCGCTGGCCAAGAAACTGTTAAG-CTTGCTATCCGTGCTCTGCTTGAGgttagtttgc ... cattttgcagGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGAC
EST: AAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAG GTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGEST: gi|116393480|gb|EG436072.1|EG436072
genomic: AAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGgttagtttgc ... cattttgcagGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAG
EST: AAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAG GTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGEST: gi|86079789|gb|DR375546.1|DR375546
genomic: AAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGgttagtttgc ... cattttgcagGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAG
EST: AAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAG GTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGEST: gi|164060712|gb|ES049273.1|ES049273
genomic: AAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGgttagtttgc ... cattttgcagGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAG
EST: CGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAG GTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGEST: gi|164139683|gb|ES200270.1|ES200270
genomic: CGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGgttagtttgc ... cattttgcagGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAG
EST: AAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAG GTTGTTGAGAGTGGGGGGAAAGAACATTGAGGTTGCTGTAATGAC
genomic: AAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGgttagtttgc ... cattttgcagGTTGTTGAGAGTGGGGG-AAAGAACATTGAGGTTGCTGTAATGAC
cgcacaagtagtggtggaacttgtaaagaagctgaaaaggatttgcattttgcagGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAGGTGTTCTGAAGCAACTAGAAGAAGAAGAAATTGATATCATTGTGG
ttgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaattgagttggattataatgttagatgagcttacttagcaaacgcacaagtagtggtggaacttgtaaagaagctgaaaaggatttgcattttgcagGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAGGTGTTCTGAAGCAACTAGAAGAAGAAGAAATTGATATCATTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - aaacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaaaa