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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctgttgtgacaagtctttgttgcttcatctattccaaagagtaggatgcggttatagcagcagtctaactttggttttcttgcttctggtagGCTGAAATGACGCAGGAATCAAACTTATCCAAGTTCAAAAGTGAAATTAATAGTTCACTG

Basic information

species Arabidopsis thaliana
transcript AT3G51090.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476183|gb|EG518775.1|EG518775
EST:     GCTTAGGAGTTGTTTCACAGTTAGTTGTCTCCAAGGGAGAGATGCAGAAA                         GCTGAAATGACGCAGGAATCAAACTTATCCAAGTTCAAAAGTGAAATTAAT
genomic: GCTTAGGAGTTGTTTCACAGTTAGTTGTCTCCAAGGGAGAGATGCAGAAAgtaagtttct ... cttctggtagGCTGAAATGACGCAGGAATCAAACTTATCCAAGTTCAAAAGTGAAATTAAT
EST: gi|116476184|gb|EG518776.1|EG518776
EST:     GCTTAGGAGTTGTTTCACAGTTAGTTGTCTCCAAGGGAGAGATGCAGAAA                         GCTGAAATGACGCAGGAATCAAACTTATCCAAGTTCAAAAGTGAAATTAAT
genomic: GCTTAGGAGTTGTTTCACAGTTAGTTGTCTCCAAGGGAGAGATGCAGAAAgtaagtttct ... cttctggtagGCTGAAATGACGCAGGAATCAAACTTATCCAAGTTCAAAAGTGAAATTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagtaggatgcggttatagcagcagtctaactttggttttcttgcttctggtagGCTGAAATGACGCAGGAATCAAACTTATCCAAGTTCAAAAGTGAAATTAATAGTTCACTG
                         gtctaac  putative branch site (score: 2)
 ttttcttgcttct  putative PPT
 taacttt  TA-rich tract