1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgagtatctgcaaagtatcctgaaagttaagctttaactcgactctatgattcggaactatttagtattttgtaatccatctaatttcttggtttttcagAACTATCAACCGACAGTGGAATGCAGAGTTCAGTTAATAACATCGAATCTGAATTAAGTGAGATAAGGCTGAGTTTACTAATGGAAATCGAGAAGAGAAA
species | Arabidopsis thaliana |
transcript | AT3G50910.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tatgattcggaactatttagtattttgtaatccatctaatttcttggtttttcagAACTATCAACCGACAGTGGAATGCAGAGTTCAGTTAATAACATCGAATCTGAATTAAGTGAGATAAGGCTGAGTTTACTAATGGAAATCGAGAAGAGAAA
atctaat putative branch site (score: 3)
tttcttggtttttc CT-rich tract
aactatttagtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtatctgcaaagtatcctgaaagttaagctttaactcgactctatgattcggaactatttagtattttgtaatccatctaatttcttggtttttcagAACTATCAACCGACAGTGGAATGCAGAGTTCAGTTAATAACATCGAATCTGAATTAAGTGAGATAAGGCTGAGTTTACTAATGGAAATCGAGAAGAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - caaagta
- - - - - - - - - -ctgaaag
- - - - - - - - - - - - - - - - - - - - - ctctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catctaa