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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaatcttttcttgtcaaaagacacaactattcttaaaactgtagtctatatactggactggtgtaagtggcatttttcgatttttgttatcagTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAG

Basic information

species Arabidopsis thaliana
transcript AT3G50830.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50830.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv00s0207g00220.t01 (Vitis vinifera), 3'ss of exon 2
gtaacaatcttttcttgtcaaaagacacaactattcttaaaactgtagtctatatactggactggtgtaagtggcatttttcgatttttgttatcagTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAG
||  ||   ||| ||  ||  |   |||   ||||||     || |  | | | |  |    |  |   ||    | ||||  ||| | ||   ||| ||||| ||||| ||||||||||||||| ||||  |||| || || |||||||||||||  ||||||||||
gtttcatcttttactgatcgca---cacttttattct-----cttttatttttctgatatcttattaatagaactaatttt--attatggtc--cagAGGAGAGGTTGGAAAATGGATTGCTTTCATTGCAATTGTACTAAGGCTTTTCTTCCCTAGACATTTCCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502698|gb|HO208238.1|HO208238
EST:     ATACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAG                         TGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT
genomic: ATACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAGgtaacaatct ... ttgttatcagTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT
EST: gi|124818632|gb|EH903498.1|EH903498
EST:     TACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAG                         TGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT
genomic: TACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAGgtaacaatct ... ttgttatcagTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT
EST: gi|124837180|gb|EH921619.1|EH921619
EST:     ATACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAG                         TGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGT
genomic: ATACCATACATCTTCCTTAGCCTTCCTAGTGTCATTTTCAACTTTCTCAGgtaacaatct ... ttgttatcagTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGT
EST: gi|124705640|gb|EH797042.1|EH797042
EST:     ATTTTCAACTTTCTCAG                         TGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT
genomic: ATTTTCAACTTTCTCAGgtaacaatct ... ttgttatcagTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtagtctatatactggactggtgtaagtggcatttttcgatttttgttatcagTGGAGATGTTGGGAAATGGATTGCTTTCGTTGCGGTTGTTCTCAGACTTTTCTTCCCTAAGCATTTCCCAG
                                          tttttgtt  CT-rich tract
                                 atttttcgattttt  TA-rich tract