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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagcagctaaaaatttcaccattatcaatctctttttttttgttttttttttttgtgctgcttgtaatgaaaagttggatcatgctgttaacaatctcttgatgctcagGAAGAAGTTGATGCTGTTTTCGTAAACGCCATTTTGACCGCTATCCAACAACGGAATTTAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G49725.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124953876|gb|EL029021.1|EL029021
EST:     TGCTGAAGATTCCAAG                         GAAGAAGTTGATGCTGTTTTCGTAAACGCCATTTTGACCGCTATCCAACAA
genomic: TGCTGAAGATTCCAAGgcaagcagct ... tgatgctcagGAAGAAGTTGATGCTGTTTTCGTAAACGCCATTTTGACCGCTATCCAACAA
EST: gi|116481836|gb|EG524428.1|EG524428
EST:     CTGGGACTGTAGACAACATCAAATGCCATCTCAATGCTGAAGATTCCAAG                         GAAGAAGTTGATGCTGTTTTCGTAAACGCCATTTTGACCGCTATCCAACAA
genomic: CTGGGACTGTAGACAACATCAAATGCCATCTCAATGCTGAAGATTCCAAGgcaagcagct ... tgatgctcagGAAGAAGTTGATGCTGTTTTCGTAAACGCCATTTTGACCGCTATCCAACAA
EST: gi|19874749|gb|AU235580.1|AU235580
EST:     CTGGGACTGTAGACAACATCAAATGCCATCTCAATGCTGAAGATTC-AAG                         GAAGAAGTTGA
genomic: CTGGGACTGTAGACAACATCAAATGCCATCTCAATGCTGAAGATTCCAAGgcaagcagct ... tgatgctcagGAAGAAGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctgcttgtaatgaaaagttggatcatgctgttaacaatctcttgatgctcagGAAGAAGTTGATGCTGTTTTCGTAAACGCCATTTTGACCGCTATCCAACAACGGAATTTAGAG
                                        tctctt  CT-rich tract
          taatgaaaa  TA-rich tract