1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acttaaacaagatattttctttggtgttcccctgcttatctttatgaatcatataggcttctttctgtggttcttcctgattctcaaattcttattgtagTTCTCCCTCTACAGTTGCTTCTGGGACATCTGAGTTTGTGGAGAAAGGAACAGATAATGTAGTCTTTAGCACATGTGATGAAGAAAAAAGTAGGGTTGTT
species | Arabidopsis thaliana |
transcript | AT3G49640.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAGATTATTGATCATAAGCTTGTTAAATGCGAACGCCGACTCAATG TTCTCCCTCTACAGTTGCTTCTGGGACATCTGAGTTTGTGGAGAAAGGAAC
genomic: TGAAGAGATTATTGATCATAAGCTTGTTAAATGCGAACGCCGACTCAATGgtaaacactt ... cttattgtagTTCTCCCTCTACAGTTGCTTCTGGGACATCTGAGTTTGTGGAGAAAGGAAC
gaatcatataggcttctttctgtggttcttcctgattctcaaattcttattgtagTTCTCCCTCTACAGTTGCTTCTGGGACATCTGAGTTTGTGGAGAAAGGAACAGATAATGTAGTCTTTAGCACATGTGATGAAGAAAAAAGTAGGGTTGTT
tcctgat putative branch site (score: 3)
ttcttatt putative PPT
aaattcttattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttaaacaagatattttctttggtgttcccctgcttatctttatgaatcatataggcttctttctgtggttcttcctgattctcaaattcttattgtagTTCTCCCTCTACAGTTGCTTCTGGGACATCTGAGTTTGTGGAGAAAGGAACAGATAATGTAGTCTTTAGCACATGTGATGAAGAAAAAAGTAGGGTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- -taaacaa
- - - - - - - - - - - - - - - -ctgctta
- - - - - - - - - - - - - - - - - - - - - - - aatcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcaaa