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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcacagcttcatggaactaacttcacagtcacagccatttttgtggttgttgattttaaagattgtttatatttctcttgtttccttgtagGGTATTGAGCCAAGCATTCGGCTAGAGGTGTGGCCATTCCTTCTTGGATT

Basic information

species Arabidopsis thaliana
transcript AT3G49350.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116445269|gb|EG487861.1|EG487861
EST:     GTAGATTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGAAGTAGA                         GGTATTGAGCCAAGCATTCGGCTAGAGGTGTGGCCATTCCTTCTTGGATT
genomic: GTAGATTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGAAGTAGAgtgagtcaca ... ttccttgtagGGTATTGAGCCAAGCATTCGGCTAGAGGTGTGGCCATTCCTTCTTGGATT
EST: gi|116424888|gb|EG467480.1|EG467480
EST:     GTAGATTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGAAGTAGA                         GGTATTGAGCCAAGCATTCGGCTAGAGATGTGGCCATTCCTTCTTGGATT
genomic: GTAGATTGCGGAATGGAGGAGTGGATTTGTTGAAGAAAGTTCGAAGTAGAgtgagtcaca ... ttccttgtagGGTATTGAGCCAAGCATTCGGCTAGAGGTGTGGCCATTCCTTCTTGGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttgtggttgttgattttaaagattgtttatatttctcttgtttccttgtagGGTATTGAGCCAAGCATTCGGCTAGAGGTGTGGCCATTCCTTCTTGGATT
           tgttgat  putative branch site (score: 4)
                             tttatatttctcttgt  putative PPT
          ttgttgattttaaaga  TA-rich tract