1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagttcctttttctcatgaatgtttgttcccttctgattctgattcagctctctactgcaacctttttactcttggcatcttgataataaaggtttagtatttgtttgtctacagGATCTAGTATTTCTTCTTCTAACCTCCGCGAGAGACCCAGGGATAATACCACGTAATCTGTATCCTCCTGAACCAGAGAGTAATGAAGGCAATGGAGAAC
species | Arabidopsis thaliana |
transcript | AT3G48760.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCATAGAGGAGTATCAGTTTTAGCTGTTGCTGTTGGTCTGATT--ATTA GATCTAGTATTTCTTCTTCTAACCTCCGCGAGAGACCCAGGGATAATACCAEST: gi|125026367|gb|EL098636.1|EL098636
genomic: ACCATAGAGGAGTATCAGTTTTAGCTGTTGCTGTTGGTCTGATTTTATTAgtgagttcct ... ttgtctacagGATCTAGTATTTCTTCTTCTAACCTCCGCGAGAGACCCAGGGATAATACCA
EST: ACCATAGAGGAGTATCAGTTTTAGCTGTTGCTGTTGGTCTGATTTTATTA GATCTAGTATTTCTTC
genomic: ACCATAGAGGAGTATCAGTTTTAGCTGTTGCTGTTGGTCTGATTTTATTAgtgagttcct ... ttgtctacagGATCTAGTATTTCTTC
acctttttactcttggcatcttgataataaaggtttagtatttgtttgtctacagGATCTAGTATTTCTTCTTCTAACCTCCGCGAGAGACCCAGGGATAATACCACGTAATCTGTATCCTCCTGAACCAGAGAGTAATGAAGGCAATGGAGAAC
tcttgat putative branch site (score: 4)
tttgttt putative PPT
atcttgataataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcctttttctcatgaatgtttgttcccttctgattctgattcagctctctactgcaacctttttactcttggcatcttgataataaaggtttagtatttgtttgtctacagGATCTAGTATTTCTTCTTCTAACCTCCGCGAGAGACCCAGGGATAATACCACGTAATCTGTATCCTCCTGAACCAGAGAGTAATGAAGGCAATGGAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA