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gtatacaatcaaaattgcatttactataccaaatcttgagttagtctctcgtttgaatgaaattggagtggctttgttttggtagGATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGATGAAGCAGAGAGGAAAGAGTTCATAGCTGGACTTCACAAGCAGAAGACT
species | Arabidopsis thaliana |
transcript | AT3G48420.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACTTAAAATCGGTGGTGGTAAAGAAAG GATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGAEST: gi|124938407|gb|EL015037.1|EL015037
genomic: TACTTAAAATCGGTGGTGGTAAAGAAAGgtatacaatc ... gttttggtagGATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGA
EST: TTGATTTATACGGCGAGTTACTTAAAATCGGTGGTGGTAAAGAAAG GATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGAEST: gi|125324256|gb|EL338336.1|EL338336
genomic: TTGATTTATACGGCGAGTTACTTAAAATCGGTGGTGGTAAAGAAAGgtatacaatc ... gttttggtagGATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGA
EST: GTGGTAAAGAAAG GATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGAEST: gi|124723557|gb|EH814959.1|EH814959
genomic: GTGGTAAAGAAAGgtatacaatc ... gttttggtagGATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGA
EST: TAAAATCGGTGGTGGTAAAGAAAG GATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGAEST: gi|125269915|gb|EL284000.1|EL284000
genomic: TAAAATCGGTGGTGGTAAAGAAAGgtatacaatc ... gttttggtagGATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGA
EST: CTTAAAATCGGTGGTGGTAAAGAAAG GATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGAEST: gi|125209784|gb|EL224738.1|EL224738
genomic: CTTAAAATCGGTGGTGGTAAAGAAAGgtatacaatc ... gttttggtagGATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGA
EST: GATGTTGATTTATACGGCGAGTTACTTAAAATCGGTGGTGGTAAAGAAAG GATGACTGCGTTATTTTAEST: gi|47832151|gb|CK121835.1|CK121835
genomic: GATGTTGATTTATACGGCGAGTTACTTAAAATCGGTGGTGGTAAAGAAAGgtatacaatc ... gttttggtagGATGACTGCGT-ATTTTA
EST: GATGTTGATTTATACGGCGAGTTACTTAAAATCGGTGGTGGTAAAGAAAG GATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGAEST: gi|124721903|gb|EH813305.1|EH813305
genomic: GATGTTGATTTATACGGCGAGTTACTTAAAATCGGTGGTGGTAAAGAAAGgtatacaatc ... gttttggtagGATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGA
EST: AAAATCGGTGGTGGTAAAGAAAG GATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGA
genomic: AAAATCGGTGGTGGTAAAGAAAGgtatacaatc ... gttttggtagGATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGA
aaatcttgagttagtctctcgtttgaatgaaattggagtggctttgttttggtagGATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGATGAAGCAGAGAGGAAAGAGTTCATAGCTGGACTTCACAAGCAGAAGACT
ctttgtttt CT-rich tract
aatgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacaatcaaaattgcatttactataccaaatcttgagttagtctctcgtttgaatgaaattggagtggctttgttttggtagGATGACTGCGTATTTTAACAAGGTTGGTTGGCCAGAGAAAGCTCCTAAAGATGAAGCAGAGAGGAAAGAGTTCATAGCTGGACTTCACAAGCAGAAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA