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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgtgcttctcctcttgagctttccagattgtgtttaagtgaatgtgaacttttatatttatggatttttttttcaatcttttttagGTGAAAGCTAGGCTAGAAGGTGGACAGTTATATACACCTGCTTATGTAGAACGTGTGACCGCTATGGTTCGAGGTGCTTCCAGGGGTATATTTGTTCCTT

Basic information

species Arabidopsis thaliana
transcript AT3G46220.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G46220.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA12G07980.1 (Glycine max), 3'ss of exon 2
---------------------------gtaattgtgct-tctcctcttgagctttcca----------gattgtgtttaagtgaatgtgaacttttatatttatggatttttttttcaatcttttt-------tagGTGAAAGCTAGGCTAGAAGGTGGACAGTTATATACACCTGCTTATGTAGAACGTGTGACCGCTATGGTTCGAGGTGCTTCCAGGGGTATATTTGTTCCTT
                             |||||  |  | |  | || |  ||   |           |||||||||  ||||  || | |  | | | || |||| |       |||||  |||       ||||||||||  ||||| |||||||||||||| ||||| ||||| ||||| |  |||||    || |||||||| ||||||    |||| ||    |||||  
gtgagtttgtgtgtgtgtgtgttggtttgaattgaaccgtgttgtgttaaatttggaatgagagtgataattgtgttttggtga--gtaatcagtgagaatt-tggaatgacagcacaatccgtttttgaaaatagGTGAAAGGAAGGCTTGAAGGTGGACAGTTGTATACTCCTGCCTATGTGGCTCGTGTTGGTGCCATGGTTCGTGGTGCTGTGCGGGGCATCACCGTTCCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttaagtgaatgtgaacttttatatttatggatttttttttcaatcttttttagGTGAAAGCTAGGCTAGAAGGTGGACAGTTATATACACCTGCTTATGTAGAACGTGTGACCGCTATGGTTCGAGGTGCTTCCAGGGGTATATTTGTTCCTT
                                 tttttttttcaatctt  CT-rich tract
               aacttttatatttatg  TA-rich tract