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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttaaacactcactaattctattctatgttctgatatacaaagcttaccagctttaaaaccattttttcagGGAACCTCTCTCTTGACCTTAATCACATCTTTGAACTACTTGATGCCTAGACCGTGTGAAACGGGGTCAATTCTATGCCAGTCGCCATCAAAACTACAGC

Basic information

species Arabidopsis thaliana
transcript AT3G45710.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874645|gb|AU235476.1|AU235476
EST:     TTTTTGGGAACATTCCCGTCATCTCCACCTCCACTTTCATTTCTCTGGCT                         GGAACCTCTCTCTTGACCTTAATCACATCTTTGAACTACTTGATGCCTAGA
genomic: TTTTTGGGAACATTCCCGTCATCTCCACCTCCACTTTCATTTCTCTGGCTgtaagttaaa ... attttttcagGGAACCTCTCTCTTGACCTTAATCACATCTTTGAACTACTTGATGCCTAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctattctatgttctgatatacaaagcttaccagctttaaaaccattttttcagGGAACCTCTCTCTTGACCTTAATCACATCTTTGAACTACTTGATGCCTAGACCGTGTGAAACGGGGTCAATTCTATGCCAGTCGCCATCAAAACTACAGC
                         agcttac  putative branch site (score: 3)
                                           ccattttttc  putative PPT
                                    tttaaaaccatttttt  TA-rich tract