1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtccaagactctttctgttgcatcaattctcttttgtggtctgataagctcaccagtatatgaaaacgtttgtttagGGAATCGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGGCCGTGTGAAGCAGGGTCAGTCCTATGCACACCGCCGTCAAAACTCCACC
species | Arabidopsis thaliana |
transcript | AT3G45680.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTTGGAAACATTCCGGTCATCGCGGCCTCTTCTTTCATTTCTCTGCTT GGAATCGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGGEST: gi|19877671|gb|AU238502.1|AU238502
genomic: TCTTTGGAAACATTCCGGTCATCGCGGCCTCTTCTTTCATTTCTCTGCTTgtaagtccaa ... gtttgtttagGGAATCGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGG
EST: TCTTTGGAAACATTCCGGTCATCGCGGCCTCTTCTTTCATTTCTCTGCTT GGAATCGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGG
genomic: TCTTTGGAAACATTCCGGTCATCGCGGCCTCTTCTTTCATTTCTCTGCTTgtaagtccaa ... gtttgtttagGGAATCGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGG
tcaattctcttttgtggtctgataagctcaccagtatatgaaaacgtttgtttagGGAATCGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGGCCGTGTGAAGCAGGGTCAGTCCTATGCACACCGCCGTCAAAACTCCACC
agctcac putative branch site (score: 3)
tttgttt putative PPT
tatatgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtccaagactctttctgttgcatcaattctcttttgtggtctgataagctcaccagtatatgaaaacgtttgtttagGGAATCGTTCTCTTGACGCTTATTGCATCTTTGGACTACTTGAGACCTCGGCCGTGTGAAGCAGGGTCAGTCCTATGCACACCGCCGTCAAAACTCCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC