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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtatccattcacataaaggccatcttaaatcttgatccactctttaccatactaatgaattattcttatttcccttggctcagTGGCAGCCGTAGCTTTAACAAATTTCAGATTCCAACAAGATAACCAAGAAAGTAATTCTTCTTCTTTATCTCTTCCCTCCCTTGCAACTTCTGTGTCTCG

Basic information

species Arabidopsis thaliana
transcript AT3G44630.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444615|gb|EG487207.1|EG487207
EST:     CATTCCGGATGAGTCATCTTGGAGTTTATGTGCCAACAGAGTCATCACTG                         TGGCAGCCGTAGCTTTAACAAATTTCAGATTCCAACAAGATAACCAAGAAA
genomic: CATTCCGGATGAGTCATCTTGGAGTTTATGTGCCAACAGAGTCATCACTGgtctgtatcc ... cttggctcagTGGCAGCCGTAGCTTTAACAAATTTCAGATTCCAACAAGATAACCAAGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttgatccactctttaccatactaatgaattattcttatttcccttggctcagTGGCAGCCGTAGCTTTAACAAATTTCAGATTCCAACAAGATAACCAAGAAAGTAATTCTTCTTCTTTATCTCTTCCCTCCCTTGCAACTTCTGTGTCTCG
                     tactaat  putative branch site (score: 1)
                               ttattcttatttccct  putative PPT
                    atactaatgaattatt  TA-rich tract