1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtagctgatagagtaatttattcaacctttgtagggtctgatcgatttctatgcaaatgggattcaacataggatagagacttttgcaagttgggatctgattagagttatatatgtagaattgaaataagtatgagtttgaatgtttgatgtttgcagAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGATGCAGATAAGAAG
species | Arabidopsis thaliana |
transcript | AT3G44620.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAG AGGATATATTGAAGGCTTATAAAATGTGTGGAAAGCCAGAGGGAATTTCCCEST: gi|116425047|gb|EG467639.1|EG467639
genomic: TTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGgtagctgata ... atgtttgcagAGGATATATTGAAGGCTTATAA--TGTGTGGAAAGCCAGAGGGAATTTCCC
EST: TGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAG AGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCEST: gi|116425046|gb|EG467638.1|EG467638
genomic: TGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGgtagctgata ... atgtttgcagAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGC
EST: TGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAG AGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGC
genomic: TGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGgtagctgata ... atgtttgcagAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGC
gagttatatatgtagaattgaaataagtatgagtttgaatgtttgatgtttgcagAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGATGCAGATAAGAAG
gtttgat putative branch site (score: 5)
atatatgtagaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctgatagagtaatttattcaacctttgtagggtctgatcgatttctatgcaaatgggattcaacataggatagagacttttgcaagttgggatctgattagagttatatatgtagaattgaaataagtatgagtttgaatgtttgatgtttgcagAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGATGCAGATAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG