1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttaggttgattctaatcttctctttgtcttaattctaagcaagtgtgacaaaaatgtaatctctctcttgtgaaagGTTAATGCCATTATTTCATTCAATAACAAATCAGCGACAGAGGCGGTTCCATATTTTGAGCAG
species | Arabidopsis thaliana |
transcript | AT3G43540.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAG GTTAATGCCATTATTTCATTCAATAACAAATCAGCGACAGAGGCGGTTCCEST: gi|164103506|gb|ES042986.1|ES042986
genomic: CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAGgttaggttga ... cttgtgaaagGTTAATGCCATTATTTCATTCAATAACAAATCAGCGACAGAGGCGGTTCC
EST: CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAG GTTAATGCCATTATTTCATTCAATAACAAATCAGCGACAEST: gi|125032517|gb|EL104786.1|EL104786
genomic: CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAGgttaggttga ... cttgtgaaagGTTAATGCCATTATTTCATTCAATAACAAATCAGCGACA
EST: CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAG GTTAATGCCATTATTTCATTCAATAACAAAT
genomic: CACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAGgttaggttga ... cttgtgaaagGTTAATGCCATTATTTCATTCAATAACAAAT
ctttgtcttaattctaagcaagtgtgacaaaaatgtaatctctctcttgtgaaagGTTAATGCCATTATTTCATTCAATAACAAATCAGCGACAGAGGCGGTTCCATATTTTGAGCAG
tcttaat putative branch site (score: 3)
tctctctcttgt putative PPT
aaaaatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggttgattctaatcttctctttgtcttaattctaagcaagtgtgacaaaaatgtaatctctctcttgtgaaagGTTAATGCCATTATTTCATTCAATAACAAATCAGCGACAGAGGCGGTTCCATATTTTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG