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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccaaatttataatatctttcacctagtattttttgttttcttactattaatgaagattatgaattggttataaaactatttggcagCTGTGAGCGGTAGAGGATTTATTGCACGCGATATCACCTTCCAAAACACAGCAGGACCGGAAAAACACCAAGCGGTCGCAATCCGATCCGATACGGATCT

Basic information

species Arabidopsis thaliana
transcript AT3G43270.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G43270.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA09G09050.1 (Glycine max), 3'ss of exon 3
-------gtaagtccaaatttataatatc--tttcacctagtattttttgttttcttactattaatgaagattatgaattggttataaaa--ctatttggcagCTGTGAGCGGTAGAGGATTTATTGCACGCGATATCACCTTCCAAAACACAGCAGGACCGGAAAAACACCAAGCGGTCGCAATCCGATCCGATACGGATCT
        |  | | |||| |  ||| |       ||  |||||  ||| |||| |||  || | |  || | || ||||| |||        |   | ||||||||||| || ||||||||  | ||||| || || |||||||||||||| |||||||| || || |||||||| || ||| |  |||| ||  | || ||
ttaatttatgtgacaaaatcttaaatgtgaacaaaacgaagtataattt-tttttttaaaatcatt--agttgattaattgattaatgtggtttgcattgcagCTGTGAGTGGCAGAGGATTCGTAGCACGAGACATTACCTTCCAAAACACGGCAGGACCAGAGAAGCACCAAGCAGTGGCACTAAGATCAGACTCAGACCT

upper sequence: AT3G43270.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA15G20550.1 (Glycine max), 3'ss of exon 3
------------gtaagtccaaatttataatatctttcacctagtattttttgttttcttactattaatgaagattatgaattggttataaaactatttggcagCTGTGAGCGGTAGAGGATTTATTGCACGCGATATCACCTTCCAAAACACAGCAGGACCGGAAAAACACCAAGCGGTCGCAATCCGATCCGATACGGATCT
              | ||  | || |||| ||| | |       ||| | |   | |   |  ||||||  || | || || |  |  |      || || |||||||||| || |||||||| || ||||| || || |||||||| ||||| |||||||| || || |||||||| || ||| |  |||| ||  | || ||
ttaaaaataacaaaaggtatatatatata-tatatatatatatatatatatatatattaaatcattaattgag-taattaactaat-gtggttgcatgtg-cagCTGTGAGTGGCAGAGGATTCATAGCACGAGACATTACCTTCCAGAACACGGCAGGACCAGAGAAGCACCAAGCAGTGGCACTGAGATCAGACTCAGACCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttttcttactattaatgaagattatgaattggttataaaactatttggcagCTGTGAGCGGTAGAGGATTTATTGCACGCGATATCACCTTCCAAAACACAGCAGGACCGGAAAAACACCAAGCGGTCGCAATCCGATCCGATACGGATCT
             tattaat  putative branch site (score: 2)
             tattaatgaagattat  TA-rich tract