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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgaggcttacatttgttatgcttctaacttgatgttttccttttattggtttttcagaaagaaagggccacacttgttcttttgtgtgattttgttttttcttttcttttgcttgcattctaaatgcagACAGATTTTCATGATACTGGAAGAGGTCCACGAGTTTCATCGATGATAGACATTTACGGCTTCACTATGGCATCAATAAATGAAACTGGGTGTGTCTTTG

Basic information

species Arabidopsis thaliana
transcript AT3G42660.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164189317|gb|ES075938.1|ES075938
EST:     GCTGGGATGTATAACTACTATTGAACATGAGGGGAACTCACGTATTGAG                         ACAGATTTTCATGATACTGGAAGAGGTCCACGAGTTTCATCGATGATAG
genomic: GCTGGGATGTATAACTACTATTGAACATGAGGGGAACTCACGTATTGAGgtacttgagg ... ctaaatgcagACAGATTTTCATGATACTGGAAGAGGTCCACGAGTTTCATCGATGATAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcttttgtgtgattttgttttttcttttcttttgcttgcattctaaatgcagACAGATTTTCATGATACTGGAAGAGGTCCACGAGTTTCATCGATGATAGACATTTACGGCTTCACTATGGCATCAATAAATGAAACTGGGTGTGTCTTTG
                                           ttctaaa  putative branch site (score: 2)
               ttttgttttttctttt  CT-rich tract
              attttgttttttcttt  TA-rich tract