Sequence
atgc intronic sequence ATGC exonic sequencegtttgtgttgatgaatgttagaatgtagttgtagatagaagatgatgatgagatggtattttattttgttttgggatagGGATGAATCAGGCGGGACTTGCAGAGTGCATTGTCCGAGCTATAAACTCATGCCATTCTTACTTGCAACCAGTTTTGTATCAAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT3G33520.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G33520.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S62_87V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------------------------------gtttgtgttgatgaatgttag----aatgtagttgtagatagaagatgatgat----gagatggtatt------ttattttgttttggg-atagGGATGAATCAGGCGGGACTTGCAGAGTGCATTGTCCGAGCTATAAACTCATGCCATTCTTACTTGCAACCAGTTTTGTATCAAAG
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gtaagtttatttgaatactggtcctttagagttgcaagaagtgaatttgtgtttgcggctcttagttctggttagcttgttgattttgaccttttatttgcgagcagccatccagagcttaacctgccatgtttgtagGGATGAATGAGGCGGGACTGGCAGAGTGCATCGTTCGAGCAATCAATGCTTGTGAACCTGAACTTCATGCTCTCCTTTATCAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86083215|gb|DR378974.1|DR378974EST: GAATGAGCGTTTTCTTGTACCTGAGACGTTATTCCAGCCTGCAGATTTAG GGATGAATCAGGCGGGACTTGCAGAGTGCATTGTCCGAGCTATAAACTCAT
genomic: GAATGAGCGTTTTCTTGTACCTGAGACGTTATTCCAGCCTGCAGATTTAGgtttgtgttg ... tttgggatagGGATGAATCAGGCGGGACTTGCAGAGTGCATTGTCCGAGCTATAAACTCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtagttgtagatagaagatgatgatgagatggtattttattttgttttgggatagGGATGAATCAGGCGGGACTTGCAGAGTGCATTGTCCGAGCTATAAACTCATGCCATTCTTACTTGCAACCAGTTTTGTATCAAAG
ttttattttgtttt CT-rich tract
tattttattttgtttt TA-rich tract