1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaagatccaatggcttagttactgtggcaattttgacatgacattgcttgatttcactgcaatttgttgtattattgatgttgcttttctctgtttaaagAACTAGCTTGTGAGACTGAGTGTAGCCGCGGTGAGGATTATCGGTTGATCAAACTCACTATCATAGACTACAAT
species | Arabidopsis thaliana |
transcript | AT3G29280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCATTTCATTCAGATGCCTAGCTCTATCTGTTATGGCCTCCATGGCACTG AACTAGCTTGTGAGACTGAGTGTAGCCGCGGTGAGGATTATCGGTTGATCAEST: gi|164134102|gb|EL970373.1|EL970373
genomic: TCATTTCATTCAGATGCCTAGCTCTATCTGTTATGGCCTCCATGGCACTGgtaacttcaa ... ctgtttaaagAACTAGCTTGTGAGACTGAGTGTAGCCGCGGTGAGGATTATCGGTTGATCA
EST: TCATTTCATTCAGATGCCTAGCTCTATCTGTTATGGCCTCCATGGCACTG AACTAGCTTGTGAGACTGAGTGTAGCCGCGGT
genomic: TCATTTCATTCAGATGCCTAGCTCTATCTGTTATGGCCTCCATGGCACTGgtaacttcaa ... ctgtttaaagAACTAGCTTGTGAGACTGAGTGTAGCCGCGGT
gcttgatttcactgcaatttgttgtattattgatgttgcttttctctgtttaaagAACTAGCTTGTGAGACTGAGTGTAGCCGCGGTGAGGATTATCGGTTGATCAAACTCACTATCATAGACTACAAT
tattgat putative branch site (score: 3)
ttgcttttctctgttt CT-rich tract
aatttgttgtattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagatccaatggcttagttactgtggcaattttgacatgacattgcttgatttcactgcaatttgttgtattattgatgttgcttttctctgtttaaagAACTAGCTTGTGAGACTGAGTGTAGCCGCGGTGAGGATTATCGGTTGATCAAACTCACTATCATAGACTACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- -gatccaa