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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctctttaaagatctctgctttattgtgtggaaagggaatatctttgatgttttgagactgatatgattgaggttttgattggtagGTGGACATTCACTTTGATAGCAATCTACTTCGGG

Basic information

species Arabidopsis thaliana
transcript AT3G27770.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124758262|gb|EH848392.1|EH848392
EST:     ACTACTATTATACTCA                         GTGGACATTCACGTTTGATAGCAATCTACTTCGGG
genomic: ACTACTATTATACTCAgtaagttctc ... tgattggtagGTGGACATTCAC-TTTGATAGCAATCTACTTCGGG
EST: gi|124781755|gb|EH871698.1|EH871698
EST:     ATTGCCCGGTTTGCTAATCGTGGATGGCGTATTTACTACTATTATACTCA                         GTGGACATTCACTTTGATAGCAATCTACTTCGGGATGGG
genomic: ATTGCCCGGTTTGCTAATCGTGGATGGCGTATTTACTACTATTATACTCAgtaagttctc ... tgattggtagGTGGACATTCACTTTGATAGCAATCTACTTCGGGATGGG
EST: gi|125312869|gb|EL326954.1|EL326954
EST:     TGCTAATCGTGGATGGCGTATTTACTACTATTATACTCA                         GTGGACATTCACTTTGATAGCAATCTACTTCGGG
genomic: TGCTAATCGTGGATGGCGTATTTACTACTATTATACTCAgtaagttctc ... tgattggtagGTGGACATTCACTTTGATAGCAATCTACTTCGGG
EST: gi|124971389|gb|EL045158.1|EL045158
EST:     ACTATTATACTCA                         GTGGACATTCACTTTGATAGCAATCTACTTCGGG
genomic: ACTATTATACTCAgtaagttctc ... tgattggtagGTGGACATTCACTTTGATAGCAATCTACTTCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagggaatatctttgatgttttgagactgatatgattgaggttttgattggtagGTGGACATTCACTTTGATAGCAATCTACTTCGGG
      aatatcttt  TA-rich tract